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Cellosaurus GM23338 (CVCL_F182)

[Text version]
Cell line name GM23338
Synonyms GM23338*B; PGP1 iPSC; PGP1-iPS; PGP1 hiPSC; PGP1-1; PGP1; HVRDi004-B; UMi031-A
Accession CVCL_F182
Secondary accession CVCL_A0ZT
Resource Identification Initiative To cite this cell line use: GM23338 (RRID:CVCL_F182)
Comments Part of: Personal Genome Project (PGP) cell line collection.
Population: Caucasian.
Omics: Genome sequenced.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Arm, skin; UBERON=UBERON_0002427.
Cell type: Fibroblast of skin; CL=CL_0002620.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_F183 (GM23248)
Children:
CVCL_E3XV (UAB-iPSC-IFT88 KO#1)CVCL_E3XM (UAB-iPSC-PKD1 KO#1)CVCL_E3XN (UAB-iPSC-PKD1 KO het #2)
CVCL_E3XP (UAB-iPSC-PKD2 KO#1)CVCL_E3XS (UAB-iPSC-PKD2 KO#2)CVCL_E3XU (UAB-iPSC-PKD2 L656W/null)
CVCL_E3XX (UAB-iPSC-PKD2-cKO NP/null #1)CVCL_E3XY (UAB-iPSC-PKD2-cKO P/null #1)CVCL_E3XT (UAB-iPSC-PKD2-Halo#1)
CVCL_E3XQ (UAB-iPSC-PKHD1 KO#1)CVCL_A0ZU (UMi031-A-2)
Sex of cell Male
Age at sampling 55Y
Category Induced pluripotent stem cell
Web pages https://my.pgp-hms.org/profile_public?hex=hu43860C
Publications

PubMed=19911041; DOI=10.1371/journal.pgen.1000718; PMCID=PMC2766639
Lee J.-H., Park I.-H., Gao Y., Li J.B., Li Z., Daley G.Q., Zhang K., Church G.M.
A robust approach to identifying tissue-specific gene expression regulatory variants using personalized human induced pluripotent stem cells.
PLoS Genet. 5:E1000718-E1000718(2009)

PubMed=26004630; DOI=10.1016/j.stemcr.2015.04.009; PMCID=PMC4471828
Tanaka Y., Hysolli E., Su J., Xiang Y.-F., Kim K.-Y., Zhong M., Li Y.-M., Heydari K., Euskirchen G., Snyder M.P., Pan X.-H., Weissman S.M., Park I.-H.
Transcriptome signature and regulation in human somatic cell reprogramming.
Stem Cell Reports 4:1125-1139(2015)

PubMed=34352618; DOI=10.1016/j.scr.2021.102474
Nourbakhsh A., Gosstola N.C., Fernandez-Valle C., Dykxhoorn D.M., Liu X.-Z.
Characterization of UMi031-A-2 inducible pluripotent stem cell line with a neurofibromatosis type 2-associated mutation.
Stem Cell Res. 55:102474-102474(2021)

PubMed=36459969; DOI=10.1016/j.stem.2022.11.004; PMCID=PMC9782786
Pantazis C.B., Yang A., Lara E., McDonough J.A., Blauwendraat C., Peng L.-R., Oguro H., Kanaujiya J., Zou J.-Z., Sebesta D., Pratt G., Cross E., Blockwick J., Buxton P., Kinner-Bibeau L.B., Medura C., Tompkins C., Hughes S., Santiana M., Faghri F., Nalls M.A., Vitale D., Ballard S., Qi Y.A., Ramos D.M., Anderson K.M., Stadler J., Narayan P., Papademetriou J., Reilly L., Nelson M.P., Aggarwal S., Rosen L.U., Kirwan P., Pisupati V., Coon S.L., Scholz S.W., Priebe T., Ottl M., Dong J., Meijer M., Janssen L.J.M., Lourenco V.S., van der Kant R., Crusius D., Paquet D., Raulin A.-C., Bu G.-J., Held A., Wainger B.J., Gabriele R.M.C., Casey J.M., Wray S., Abu-Bonsrah K.D., Parish C.L., Beccari M.S., Cleveland D.W., Li E., Rose I.V.L., Kampmann M., Calatayud Aristoy C., Verstreken P., Heinrich L., Chen M.Y., Schule B., Dou D., Holzbaur E.L.F., Zanellati M.C., Basundra R., Deshmukh M., Cohen S., Khanna R., Raman M., Nevin Z.S., Matia M., Van Lent J., Timmerman V., Conklin B.R., Chase K.J., Zhang K., Funes S., Bosco D.A., Erlebach L., Welzer M., Kronenberg-Versteeg D., Lyu G.-C., Arenas E., Coccia E., Sarrafha L., Ahfeldt T., Marioni J.C., Skarnes W.C., Cookson M.R., Ward M.E., Merkle F.T.
A reference human induced pluripotent stem cell line for large-scale collaborative studies.
Cell Stem Cell 29:1685-1702.e22(2022)

Cross-references
Cell line collections (Providers) Coriell; GM23338
Cell line databases/resources hPSCreg; HVRDi004-B
SKIP; SKIP000178
SKIP; SKIP004355
Biological sample resources BioSample; SAMN00211020
BioSample; SAMN03485859
ENCODE; ENCBS368AAA
ENCODE; ENCBS373AAA
Encyclopedic resources Wikidata; Q54853011
Experimental variables resources EFO; EFO_0007950
Gene expression databases GEO; GSM1019346
GEO; GSM1019347
GEO; GSM1658378
GEO; GSM2072609
GEO; GSM2072610
Entry history
Entry creation22-Oct-2012
Last entry update19-Dec-2024
Version number20