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Cellosaurus HT29-R (CVCL_EQ23)

[Text version]
Cell line name HT29-R
Synonyms HT29R
Accession CVCL_EQ23
Resource Identification Initiative To cite this cell line use: HT29-R (RRID:CVCL_EQ23)
Comments Population: Caucasian.
Selected for resistance to: ChEBI; CHEBI_44185; Methotrexate (MTX).
Derived from site: In situ; Colon; UBERON=UBERON_0001155.
Sequence variations
  • Mutation; HGNC; HGNC:583; APC; Simple; p.Glu853Ter (c.2557G>T); ClinVar=VCV001071632; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:583; APC; Simple; p.Thr1556Asnfs*3 (c.4666dupA) (c.4666_4667insA); ClinVar=VCV000428112; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.Pro449Thr (c.1345C>A); ClinVar=VCV001333250; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:6770; SMAD4; Simple; p.Gln311Ter (c.931C>T); ClinVar=VCV000230663; Zygosity=Homozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Arg273His (c.818G>A); ClinVar=VCV000012366; Zygosity=Homozygous (from parent cell line).
Disease Colon adenocarcinoma (NCIt: C4349)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_0320 (HT-29)
Sex of cell Female
Age at sampling 44Y
Category Cancer cell line
Publications

PubMed=17945194; DOI=10.1016/j.bcp.2007.08.034
Selga E., Noe V., Ciudad C.J.
Transcriptional regulation of aldo-keto reductase 1C1 in HT29 human colon cancer cells resistant to methotrexate: role in the cell cycle and apoptosis.
Biochem. Pharmacol. 75:414-426(2008)

PubMed=18694510; DOI=10.1186/1755-8794-1-35; PMCID=PMC2527490
Selga E., Morales C., Noe V., Peinado M.A., Ciudad C.J.
Role of caveolin 1, E-cadherin, enolase 2 and PKCalpha on resistance to methotrexate in human HT29 colon cancer cells.
BMC Med. Genomics 1:35.1-35.17(2008)

Cross-references
Cell line databases/resources cancercelllines; CVCL_EQ23
ColonAtlas; HT29R
Encyclopedic resources Wikidata; Q54896594
Gene expression databases GEO; GSM288501
GEO; GSM288502
GEO; GSM288536
Entry history
Entry creation26-Sep-2016
Last entry update19-Dec-2024
Version number20