Cell line name |
HT29-R |
Synonyms |
HT29R |
Accession |
CVCL_EQ23 |
Resource Identification Initiative |
To cite this cell line use: HT29-R (RRID:CVCL_EQ23) |
Comments |
Population: Caucasian. Selected for resistance to: ChEBI; CHEBI:44185; Methotrexate (MTX). Derived from site: In situ; Colon; UBERON=UBERON_0001155. |
Sequence variations |
- Mutation; HGNC; 583; APC; Simple; p.Glu853Ter (c.2557G>T); ClinVar=VCV001071632; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 583; APC; Simple; p.Thr1556Asnfs*3 (c.4666dupA) (c.4666_4667insA); ClinVar=VCV000428112; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 8975; PIK3CA; Simple; p.Pro449Thr (c.1345C>A); ClinVar=VCV001333250; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 6770; SMAD4; Simple; p.Gln311Ter (c.931C>T); ClinVar=VCV000230663; Zygosity=Homozygous (from parent cell line).
- Mutation; HGNC; 11998; TP53; Simple; p.Arg273His (c.818G>A); ClinVar=VCV000012366; Zygosity=Homozygous (from parent cell line).
|
Disease |
Colon adenocarcinoma (NCIt: C4349) |
Species of origin |
Homo sapiens (Human)
(NCBI Taxonomy: 9606) |
Hierarchy |
Parent: CVCL_0320 (HT-29) |
Sex of cell |
Female |
Age at sampling |
44Y |
Category |
Cancer cell line |
Publications | PubMed=17945194; DOI=10.1016/j.bcp.2007.08.034 Selga E., Noe V., Ciudad C.J. Transcriptional regulation of aldo-keto reductase 1C1 in HT29 human colon cancer cells resistant to methotrexate: role in the cell cycle and apoptosis. Biochem. Pharmacol. 75:414-426(2008) PubMed=18694510; DOI=10.1186/1755-8794-1-35; PMCID=PMC2527490 Selga E., Morales C., Noe V., Peinado M.A., Ciudad C.J. Role of caveolin 1, E-cadherin, enolase 2 and PKCalpha on resistance to methotrexate in human HT29 colon cancer cells. BMC Med. Genomics 1:35.1-35.17(2008) |
Cross-references |
Cell line databases/resources |
cancercelllines; CVCL_EQ23
ColonAtlas; HT29R
|
Encyclopedic resources |
Wikidata; Q54896594
|
Gene expression databases |
GEO; GSM288501
GEO; GSM288502
GEO; GSM288536
|
Entry history |
Entry creation | 26-Sep-2016 |
Last entry update | 05-Oct-2023 |
Version number | 19 |
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