Cellosaurus Ca Ski (CVCL_1100)
Cell line name | Ca Ski | ||||||||||||||||||||||||||||||||||||
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Synonyms | Ca-Ski; CaSki; Caski; CASKI | ||||||||||||||||||||||||||||||||||||
Accession | CVCL_1100 | ||||||||||||||||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: Ca Ski (RRID:CVCL_1100) | ||||||||||||||||||||||||||||||||||||
Comments | Group: Space-flown cell line (cellonaut). Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: Naval Biosciences Laboratory (NBL) collection (transferred to ATCC in 1982). Population: Caucasian. Virology: Contains from 100 to 800 copies of the HPV16 genome; some complete and others truncated. Doubling time: 3.2 days (PubMed=29156801). Microsatellite instability: Stable (MSS) (Sanger). Transformant: NCBI_TaxID; 333760; Human papillomavirus type 16 (HPV16). Omics: CNV analysis. Omics: Deep exome analysis. Omics: Deep quantitative proteome analysis. Omics: DNA methylation analysis. Omics: Protein expression by reverse-phase protein arrays. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: Metastatic; Small intestine; UBERON=UBERON_0002108. | ||||||||||||||||||||||||||||||||||||
Sequence variations |
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HLA typing | Source: PubMed=26589293
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Genome ancestry | Source: PubMed=30894373
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Disease | Human papillomavirus-related cervical squamous cell carcinoma (NCIt: C27676) Squamous cell carcinoma of the cervix uteri (ORDO: Orphanet_213767) | ||||||||||||||||||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||||||||||||||||||
Sex of cell | Female | ||||||||||||||||||||||||||||||||||||
Age at sampling | 40Y | ||||||||||||||||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||||||||||||||||
STR profile | Source(s): AddexBio=C0008004/375; ATCC=CRL-1550; CCRID; CLS=300145; Cosmic-CLP=906824; DepMap=ACH-001336; ECACC=87020501; JCRB=IFO50007; KCLB=21550; PubMed=25877200; PubMed=29156801; RCB=RCB1947; TKG=TKG 0366 Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||||||||||||||||
Web pages | https://www.thermofisher.com/ch/en/home/technical-resources/cell-lines/c/cell-lines-detail-21.html | ||||||||||||||||||||||||||||||||||||
Publications | PubMed=867042; DOI=10.1126/science.867042 PubMed=2990217; PMCID=PMC1888002 PubMed=3029430; DOI=10.1128/JVI.61.4.962-971.1987; PMCID=PMC254051 PubMed=3371749; DOI=10.1016/0090-8258(88)90029-7 PubMed=7751322; DOI=10.1007/BF01366967 CLPUB00481 PubMed=9887230; DOI=10.1006/gyno.1998.5194 PubMed=10423141; DOI=10.1099/0022-1317-80-7-1725 PubMed=15531914; DOI=10.1038/sj.onc.1208235 PubMed=17311676; DOI=10.1186/1471-2164-8-53; PMCID=PMC1805756 PubMed=17611311 PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113 PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662 PubMed=21439369; DOI=10.1016/j.mcp.2011.03.003 PubMed=22412903; DOI=10.1371/journal.pone.0032667; PMCID=PMC3296745 PubMed=24134916; DOI=10.1186/1755-8166-6-44; PMCID=PMC3879223 PubMed=24201445; DOI=10.1101/gr.164806.113; PMCID=PMC3912410 PubMed=25485619; DOI=10.1038/nbt.3080 PubMed=25877200; DOI=10.1038/nature14397 PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469 PubMed=29156801; DOI=10.18632/oncotarget.21174; PMCID=PMC5689691 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675 PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775 | ||||||||||||||||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||||||||||||||||
Cell line collections (Providers) | AddexBio; C0008004/375
ATCC; CRL-1550 ATCC; CRM-CRL-1550 ATCC; CRL-7915 - Discontinued BCRC; 60251 CCTCC; GDC0111 CLS; 300145 ECACC; 87020501 IBRC; C10345 ICLC; HTL98018 IZSLER; BS TCL 201 JCRB; IFO50007 KCB; KCB 2013034YJ KCLB; 21550 RCB; RCB1947 TKG; TKG 0366 | ||||||||||||||||||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0002165
CLO; CLO_0002201 CLO; CLO_0050930 CLDB; cl603 CLDB; cl604 CLDB; cl605 CLDB; cl4940 cancercelllines; CVCL_1100 CCRID; 1101HUM-PUMC000101 CCRID; 1102HUM-NIFDC00093 CCRID; 3101HUMTCHu137 CCRID; 4201HUM-CCTCC00111 Cell_Model_Passport; SIDM00923 Cosmic-CLP; 906824 DepMap; ACH-001336 IGRhCellID; CaSki%20GEO LINCS_HMS; 50006 LINCS_LDP; LCL-1541 Lonza; 1669 | ||||||||||||||||||||||||||||||||||||
Anatomy/cell type resources | BTO; BTO:0003109 | ||||||||||||||||||||||||||||||||||||
Biological sample resources | BioSample; SAMN01821540
BioSample; SAMN01821672 BioSample; SAMN01821725 BioSample; SAMN03473214 | ||||||||||||||||||||||||||||||||||||
Chemistry resources | ChEMBL-Cells; CHEMBL3308097
ChEMBL-Targets; CHEMBL1075403 GDSC; 906824 PharmacoDB; CaSki_158_2019 PubChem_Cell_line; CVCL_1100 | ||||||||||||||||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54808287 | ||||||||||||||||||||||||||||||||||||
Experimental variables resources | EFO; EFO_0006549 | ||||||||||||||||||||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-783
ArrayExpress; E-MTAB-2706 ArrayExpress; E-MTAB-3610 GEO; GSM29720 GEO; GSM113861 GEO; GSM226732 GEO; GSM226867 GEO; GSM253297 GEO; GSM675733 GEO; GSM685445 GEO; GSM722572 GEO; GSM722573 GEO; GSM723053 GEO; GSM723054 GEO; GSM827309 GEO; GSM1669667 | ||||||||||||||||||||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 687507
Cosmic; 760221 Cosmic; 809232 Cosmic; 846182 Cosmic; 877469 Cosmic; 906824 Cosmic; 925357 Cosmic; 928904 Cosmic; 1019307 Cosmic; 1131519 Cosmic; 1193033 Cosmic; 1201775 Cosmic; 1324211 Cosmic; 1995364 Cosmic; 2060797 Cosmic; 2301538 Cosmic; 2646655 Cosmic; 2660195 Cosmic; 2668297 Cosmic; 2791017 Cosmic; 2816212 IARC_TP53; 21261 Progenetix; CVCL_1100 | ||||||||||||||||||||||||||||||||||||
Proteomic databases | PRIDE; PXD030304 | ||||||||||||||||||||||||||||||||||||
Sequence databases | EGA; EGAS00001000610
EGA; EGAS00001000978 | ||||||||||||||||||||||||||||||||||||
Entry history | |||||||||||||||||||||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||||||||||||||||||||
Last entry update | 02-May-2024 | ||||||||||||||||||||||||||||||||||||
Version number | 42 |