PubMed=27895111; DOI=10.1101/gr.214007.116; PMCID=PMC5411763
Huddleston J.L., Chaisson M.J.P., Steinberg K.M., Warren W.C., Hoekzema K., Gordon D., Graves-Lindsay T.A., Munson K.M., Kronenberg Z.N., Vives L., Peluso P., Boitano M., Chin C.-S., Korlach J., Wilson R.K., Eichler E.E.
Discovery and genotyping of structural variation from long-read haploid genome sequence data.
Genome Res. 27:677-685(2017)

PubMed=28396521; DOI=10.1101/gr.213611.116; PMCID=PMC5411779
Schneider V.A., Graves-Lindsay T.A., Howe K., Bouk N., Chen H.-C., Kitts P.A., Murphy T.D., Pruitt K.D., Thibaud-Nissen F., Albracht D., Fulton R.S., Kremitzki M., Magrini V., Markovic C., McGrath S., Steinberg K.M., Auger K., Chow W., Collins J., Harden G., Hubbard T.J.P., Pelan S., Simpson J.T., Threadgold G., Torrance J., Wood J.M., Clarke L., Koren S., Boitano M., Peluso P., Li H., Chin C.-S., Phillippy A.M., Durbin R., Wilson R.K., Flicek P., Eichler E.E., Church D.M.
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.
Genome Res. 27:849-864(2017)

PubMed=30013044; DOI=10.1038/s41592-018-0054-7; PMCID=PMC6341484
Li H., Bloom J.M., Farjoun Y., Fleharty M., Gauthier L., Neale B.M., MacArthur D.G.
A synthetic-diploid benchmark for accurate variant-calling evaluation.
Nat. Methods 15:595-597(2018)

PubMed=32663838; DOI=10.1038/s41586-020-2547-7; PMCID=PMC7484160
Miga K.H., Koren S., Rhie A., Vollger M.R., Gershman A., Bzikadze A.V., Brooks S., Howe E., Porubsky D., Logsdon G.A., Schneider V.A., Potapova T.A., Wood J.M., Chow W., Armstrong J., Fredrickson J., Pak E., Tigyi K., Kremitzki M., Markovic C., Maduro V., Dutra A., Bouffard G.G., Chang A.M., Hansen N.F., Wilfert A.B., Thibaud-Nissen F., Schmitt A.D., Belton J.-M., Selvaraj S., Dennis M.Y., Soto D.C., Sahasrabudhe R., Kaya G., Quick J., Loman N.J., Holmes N., Loose M.W., Surti U., Risques R.A., Graves-Lindsay T.A., Fulton R.S., Hall I.M., Paten B., Howe K., Timp W., Young A.C., Mullikin J.C., Pevzner P.A., Gerton J.L., Sullivan B.A., Eichler E.E., Phillippy A.M.
Telomere-to-telomere assembly of a complete human X chromosome.
Nature 585:79-84(2020)