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Cellosaurus HCT116 VIM RFP (CVCL_UR40)

[Text version]
Cell line name HCT116 VIM RFP
Accession CVCL_UR40
Resource Identification Initiative To cite this cell line use: HCT116 VIM RFP (RRID:CVCL_UR40)
Comments Population: Caucasian.
Characteristics: Useful in vitro cell model for dissecting the molecular switches underlying epithelial to mesenchymal transition (EMT) and for identifying compounds that target EMT in colorectal cancer (ATCC=CCL-247EMT).
Characteristics: Using CRISPR/Cas9 a RFP reporter gene was integrated at the C-terminus of VIM (ATCC=CCL-247EMT).
Doubling time: 22 hours (ATCC=CCL-247EMT).
Genetic integration: Method=CRISPR/Cas9; Gene=FPbase; EGE3L; DsRed (Note=drFP583, red fluorescent protein from Discosoma sp.).
Derived from site: In situ; Colon; UBERON=UBERON_0001155.
Sequence variations
  • Mutation; HGNC; HGNC:173; ACVR2A; Simple; p.Lys437Argfs*5 (c.1310delA); dbSNP=rs764719749; Zygosity=Homozygous (from parent cell line).
  • Mutation; HGNC; HGNC:1101; BRCA2; Simple; p.Ile2675Aspfs*6 (c.8021dupA) (c.8021_8022insA); ClinVar=VCV000267050; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:1787; CDKN2A; Simple; p.Arg24Serfs*20 (c.68dupG) (c.68_69insG) (p.G23fs); Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:2514; CTNNB1; Simple; p.Ser45del (c.133_135delTCT); ClinVar=VCV000017576; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:3373; EP300; Simple; p.Met1470Cysfs*22 (c.4408delA); Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:3373; EP300; Simple; p.Asn1700Thrfs*9 (c.5099delA); Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:6407; KRAS; Simple; p.Gly13Asp (c.38G>A); ClinVar=VCV000012580; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.His1047Arg (c.3140A>G); ClinVar=VCV000013652; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:9277; PPM1D; Simple; p.Leu450Ter (c.1349delT) (p.Leu450fs) (c.1344delT); Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11773; TGFBR2; Simple; p.Lys128Serfs*35 (c.383delA); ClinVar=VCV000477546; Zygosity=Homozygous (from parent cell line).
Disease Colon carcinoma (NCIt: C4910)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_0291 (HCT 116)
Sex of cell Male
Age at sampling 48Y
Category Cancer cell line
STR profile Source(s): ATCC=CCL-247EMT

Markers:
AmelogeninX,Y
CSF1PO7,10
D5S81810,11
D7S82011,12
D13S31710,13
D16S53911,13,14
TH018,9
TPOX8
vWA20,22

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Cross-references
Cell line collections (Providers) ATCC; CCL-247EMT
Cell line databases/resources cancercelllines; CVCL_UR40
Encyclopedic resources Wikidata; Q93985520
Entry history
Entry creation25-Feb-2019
Last entry update19-Dec-2024
Version number11