Cellosaurus cell line GM12828 (CVCL

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Cellosaurus GM12828 (CVCL_R679)

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Cross-references
Cell line name	GM12828
Accession	CVCL_R679
Resource Identification Initiative	To cite this cell line use: GM12828 (RRID:CVCL_R679)
Comments	Part of: CEPH/Utah pedigree cell line collection. Part of: International Genome Sample Resource (1000 genomes project) cell lines. Registration: CEPH Families Reference Panel; 145612. Population: Caucasian; Utah residents with ancestry from Northern and Western Europe. Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV). Omics: CAGE-seq analysis. Omics: CNV analysis. Omics: Genome sequenced. Omics: Transcriptome analysis by microarray. Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Species of origin	Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell	Female
Age at sampling	Age unspecified
Category	Transformed cell line
Web pages	https://www.cephb.fr/en/familles_CEPH.php
Publications	PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589 Nayak R.R., Kearns M., Spielman R.S., Cheung V.G. Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. Genome Res. 19:1953-1962(2009) PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022 Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S. Polymorphic cis- and trans-regulation of human gene expression. PLoS Biol. 8:e1000480.1-e1000480.14(2010) PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424 Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E. Population-genetic properties of differentiated human copy-number polymorphisms. Am. J. Hum. Genet. 88:317-332(2011) PubMed=29116076; DOI=10.1038/s41467-017-01467-7; PMCID=PMC5677018 Garieri M., Delaneau O., Santoni F.A., Fish R.J., Mull D., Carninci P., Dermitzakis E.T., Antonarakis S.E., Fort A. The effect of genetic variation on promoter usage and enhancer activity. Nat. Commun. 8:1358.1-1358.9(2017)
Cell line collections (Providers)	Coriell; GM12828
Cell line databases/resources	CLO; CLO_0022613
Biological sample resources	BioSample; SAMN00801800 IGSR; NA12828
Encyclopedic resources	Wikidata; Q54846101
Gene expression databases	ArrayExpress; E-MTAB-5835 GEO; GSM25666 GEO; GSM25667 GEO; GSM315009 GEO; GSM315010 GEO; GSM421037 GEO; GSM421038 GEO; GSM648931 GEO; GSM906203 GEO; GSM906204 GEO; GSM1719827
Entry history
Entry creation	05-Nov-2013
Last entry update	29-Jun-2023
Version number	18