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Cellosaurus GM06991 (CVCL_R580)

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Cell line name GM06991
Synonyms CEPH-1341-NA06991; 1341-8314
Accession CVCL_R580
Secondary accession CVCL_G423
Resource Identification Initiative To cite this cell line use: GM06991 (RRID:CVCL_R580)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: CEPH/Utah pedigree cell line collection.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 134102.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: SNP array analysis.
Omics: Transcriptome analysis by microarray.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
HLA typing Source: IPD-IMGT/HLA=25851
Class I
HLA-AA*02:01,03:01
HLA-BB*07:02,07:02:01
HLA-CC*07:02,07:02
Class II
HLA-DPDPA1*01:03,01:04
DPB1*04:01,15:01
HLA-DQDQA1*01:02,03:01
DQB1*03:02:01,06:02
HLA-DRDRB1*04:04,15:01
DRB4*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 42Y
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

CLPUB00447
Mulivor R.A., Suchy S.F.
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In misc. document) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda; USA (1992)

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=24924344; DOI=10.1186/1756-0500-7-360; PMCID=PMC4068968
Hariani G.D., Lam E.J., Havener T.M., Kwok P.-Y., McLeod H.L., Wagner M.J., Motsinger-Reif A.A.
Application of next generation sequencing to CEPH cell lines to discover variants associated with FDA approved chemotherapeutics.
BMC Res. Notes 7:360.1-360.10(2014)

PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005; PMCID=PMC4695224
Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U., Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R., Scott S.A., Smith C.-Y.H., Toji L.H., Turner A., Kalman L.V.
Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a GeT-RM collaborative project.
J. Mol. Diagn. 18:109-123(2016)

Cross-references
Cell line collections (Providers) Coriell; GM06991
Cell line databases/resources CLO; CLO_0036555
cancercelllines; CVCL_R580
dbMHC; 48583
IHW; IHW01053
IPD-IMGT/HLA; 25851
Biological sample resources IGSR; NA06991
Encyclopedic resources Wikidata; Q54842432
Gene expression databases GEO; GSM25353
GEO; GSM25355
GEO; GSM112393
GEO; GSM112760
GEO; GSM188775
GEO; GSM291587
GEO; GSM316432
GEO; GSM316433
GEO; GSM316434
GEO; GSM420469
GEO; GSM420470
GEO; GSM648858
GEO; GSM861984
GEO; GSM861985
GEO; GSM861986
GEO; GSM861987
GEO; GSM861988
GEO; GSM861989
Polymorphism and mutation databases Progenetix; CVCL_R580
Entry history
Entry creation05-Nov-2013
Last entry update05-Oct-2023
Version number22