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Cellosaurus HG00254 (CVCL_P775)

[Text version]
Cell line name HG00254
Accession CVCL_P775
Resource Identification Initiative To cite this cell line use: HG00254 (RRID:CVCL_P775)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Population: Caucasian; British from England and Scotland (GBR).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: H3K4me1 ChIP-seq epigenome analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: H3K27ac ChIP-seq epigenome analysis.
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Publications

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=31048460; DOI=10.1126/science.aat8266
Delaneau O., Zazhytska M., Borel C., Giannuzzi G., Rey G., Howald C., Kumar S., Ongen H., Popadin K.Y., Marbach D., Ambrosini G., Bielser D., Hacker D.L., Romano L., Ribaux P., Wiederkehr M., Falconnet E., Bucher P., Bergmann S., Antonarakis S.E., Reymond A., Dermitzakis E.T.
Chromatin three-dimensional interactions mediate genetic effects on gene expression.
Science 364:eaat8266.1-eaat8266.10(2019)

Cross-references
Cell line collections (Providers) Coriell; HG00254
Biological sample resources BioSamples; SAME123050
IGSR; HG00254
Encyclopedic resources Wikidata; Q54883421
Gene expression databases ArrayExpress; E-MTAB-3656
ArrayExpress; E-MTAB-3657
GEO; GSM649603
GEO; GSM1718160
Entry history
Entry creation05-Nov-2013
Last entry update29-Jun-2023
Version number15