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Cellosaurus GM18999 (CVCL_P082)

[Text version]
Cell line name GM18999
Accession CVCL_P082
Resource Identification Initiative To cite this cell line use: GM18999 (RRID:CVCL_P082)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Population: Japanese in Tokyo (JPT).
Virology: Contains a chromosomally integrated human herpesvirus 6A (CI-HHV-6A).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: Transcriptome analysis by microarray.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Publications

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D., Hafler D.A., Daly M.J., Altshuler D.M.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=24057213; DOI=10.1093/nar/gkt840; PMCID=PMC3874159
Huang Y., Hidalgo-Bravo A., Zhang E.-J., Cotton V.E., Mendez-Bermudez A., Wig G.M., Medina-Calzada Z., Neumann R., Jeffreys A.J., Winney B., Wilson J.F., Clark D.A., Dyer M.J.S., Royle N.J.
Human telomeres that carry an integrated copy of human herpesvirus 6 are often short and unstable, facilitating release of the viral genome from the chromosome.
Nucleic Acids Res. 42:315-327(2014)

Cross-references
Cell line collections (Providers) Coriell; GM18999
Cell line databases/resources CLO; CLO_0025723
Biological sample resources IGSR; NA18999
Encyclopedic resources Wikidata; Q54850035
Gene expression databases GEO; GSM112696
GEO; GSM113069
GEO; GSM291857
GEO; GSM315137
GEO; GSM649044
GEO; GSM1720046
Entry history
Entry creation05-Nov-2013
Last entry update29-Jun-2023
Version number16