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Cellosaurus UCSD-242L (CVCL_M009)

[Text version]
Cell line name UCSD-242L
Synonyms UCSD-242l; UCSD 242L; UCSD242L
Accession CVCL_M009
Resource Identification Initiative To cite this cell line use: UCSD-242L (RRID:CVCL_M009)
Comments Omics: Deep exome analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis by RNAseq.
HLA typing Source: PubMed=26589293
Class I
HLA-AA*02:02,32:01
HLA-BB*40:02,40:02
HLA-CC*02:02,03:04
Class II
HLA-DQDQA1*01:03,03:02
DQB1*03:02,06:11
HLA-DRDRB1*04:04,13:01
Disease Melanoma (NCIt: C3224)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Category Cancer cell line
STR profile Source(s): PubMed=25877200

Markers:
AmelogeninX
CSF1PO11
D3S135816,17
D5S81812
D7S8208
D8S117910,12
D13S3178,10
D16S5399,12,13
D18S5114,16
D21S1128,31.2
FGA20,21,23
Penta D10,12
Penta E8,10
TH019
TPOX8,9
vWA17,19

Run an STR similarity search on this cell line
Publications

PubMed=25485619; DOI=10.1038/nbt.3080
Klijn C., Durinck S., Stawiski E.W., Haverty P.M., Jiang Z.-S., Liu H.-B., Degenhardt J., Mayba O., Gnad F., Liu J.-F., Pau G., Reeder J., Cao Y., Mukhyala K., Selvaraj S.K., Yu M.-M., Zynda G.J., Brauer M.J., Wu T.D., Gentleman R.C., Manning G., Yauch R.L., Bourgon R., Stokoe D., Modrusan Z., Neve R.M., de Sauvage F.J., Settleman J., Seshagiri S., Zhang Z.-M.
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Yu M., Selvaraj S.K., Liang-Chu M.M.Y., Aghajani S., Busse M., Yuan J., Lee G., Peale F.V., Klijn C., Bourgon R., Kaminker J.S., Neve R.M.
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Scholtalbers J., Boegel S., Bukur T., Byl M., Goerges S., Sorn P., Loewer M., Sahin U., Castle J.C.
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Cell line collections (Providers) NCI-DTP; UCSD 242L
Biological sample resources BioSample; SAMN03473115
Chemistry resources PharmacoDB; UCSD242l_1637_2019
Encyclopedic resources Wikidata; Q54989710
Experimental variables resources EFO; EFO_0006769
Gene expression databases ArrayExpress; E-MTAB-2706
Polymorphism and mutation databases Cosmic; 1303060
Sequence databases EGA; EGAS00001000610
EGA; EGAS00001002554
Entry history
Entry creation06-May-2013
Last entry update05-Oct-2023
Version number14