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Cellosaurus JK28 (CVCL_JL97)

[Text version]
Cell line name JK28
Synonyms JKBulk clone 28
Accession CVCL_JL97
Resource Identification Initiative To cite this cell line use: JK28 (RRID:CVCL_JL97)
Comments Population: Caucasian.
Characteristics: Transfected with a dCas9-BFP-KRAB construct.
Doubling time: ~48 hours (ATCC=CRL-3358).
Genetic integration: Method=Transfection/transduction; Gene=FPbase; SDS4K; BFP (Note=Blue fluorescent protein derived from GFP).
Genetic integration: Method=Transfection/transduction; Gene=UniProtKB; Q99ZW2; Streptomyces pyogenes Cas9 (Note=With p.Asp10Ala and p.His840Ala and KRAB domain = dCas9-KRAB).
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: T-cell; CL=CL_0000084.
Sequence variations
  • Mutation; HGNC; HGNC:959; BAX; Simple; p.Glu41Argfs*19 (c.121delG); ClinVar=VCV000009512; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:959; BAX; Simple; p.Glu41Glyfs*33 (c.121dupG); ClinVar=VCV000009511; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:16712; FBXW7; Simple; p.Arg505Cys (c.1513C>T); ClinVar=VCV000069961; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:6079; INPP5D; Simple; p.Gln345Ter (c.1033C>T); Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:6079; INPP5D; Simple; c.1097+1065_1097+1112del47; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:7325; MSH2; Simple; p.Arg711Ter (c.2131C>T); ClinVar=VCV000090903; Zygosity=Homozygous (from parent cell line).
  • Mutation; HGNC; HGNC:7329; MSH6; Simple; p.Phe1088Serfs*2 (c.3261delC); ClinVar=VCV000089363; Zygosity=Homozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11491; SYK; Simple; p.Met34Hisfs*3 (c.98_99insG); Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11998; TP53; Simple; p.Arg196Ter (c.586C>T); ClinVar=VCV000043589; Zygosity=Heterozygous (from parent cell line).
Disease Childhood T acute lymphoblastic leukemia (NCIt: C7953)
Precursor T-cell acute lymphoblastic leukemia (ORDO: Orphanet_99861)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_JL96 (JKBulk)
Sex of cell Male
Age at sampling 14Y
Category Cancer cell line
STR profile Source(s): ATCC=CRL-3358

Markers:
AmelogeninX,Y
CSF1PO11,12
D5S8189
D7S8207.3,8,10
D13S3178,12
D16S53911
TH016,9.3
TPOX8,10
vWA18

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Publications

PubMed=27057542; DOI=10.1155/2016/5052369; PMCID=PMC4753324
Chi S., Weiss A., Wang H.-P.
A CRISPR-based toolbox for studying T cell signal transduction.
BioMed Res. Int. 2016:5052369.1-5052369.10(2016)

Cross-references
Cell line collections (Providers) ATCC; CRL-3358
Cell line databases/resources cancercelllines; CVCL_JL97
Encyclopedic resources Wikidata; Q54898965
Entry history
Entry creation15-May-2017
Last entry update19-Dec-2024
Version number19