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Cellosaurus RKO BRAF(V600E/-/-) (CVCL_HE17)

[Text version]
Cell line name RKO BRAF(V600E/-/-)
Synonyms BRAF (V600E/-/-) RKO
Accession CVCL_HE17
Resource Identification Initiative To cite this cell line use: RKO BRAF(V600E/-/-) (RRID:CVCL_HE17)
Comments Characteristics: RKO carries a stable triplication of the BRAF gene with one wild-type (V-600) and two mutant alleles (E-600). This KO cell line carries only the mutant allele.
Knockout cell: Method=Homologous recombination; HGNC; HGNC:1097; BRAF (Note=2 of 3 alleles).
Derived from site: In situ; Colon; UBERON=UBERON_0001155.
Sequence variations
  • Mutation; HGNC; HGNC:173; ACVR2A; Simple; p.Lys437Argfs*5 (c.1310delA); dbSNP=rs764719749; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:1097; BRAF; Simple_edited; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Homozygous; Note=By method not specified (Horizon_Discovery=HD+106-004).
  • Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.His1047Arg (c.3140A>G); ClinVar=VCV000013652; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11773; TGFBR2; Simple; p.Lys128Serfs*35 (c.383delA); ClinVar=VCV000477546; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; HGNC:11773; TGFBR2; Simple; p.Leu452Pro (c.1355T>C); ClinVar=VCV000930524; Zygosity=Heterozygous (from parent cell line).
Disease Colon carcinoma (NCIt: C4910)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_0504 (RKO)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Cancer cell line
Publications

PubMed=19661383; DOI=10.1126/science.1174229; PMCID=PMC2820374
Yun J., Rago C., Cheong I., Pagliarini R., Angenendt P., Rajagopalan H., Schmidt K., Willson J.K.V., Markowitz S.D., Zhou S.-B., Diaz L.A. Jr., Velculescu V.E., Lengauer C., Kinzler K.W., Vogelstein B., Papadopoulos N.
Glucose deprivation contributes to the development of KRAS pathway mutations in tumor cells.
Science 325:1555-1559(2009)

Cross-references
Cell line collections (Providers) Horizon_Discovery; HD+106-004
Cell line databases/resources cancercelllines; CVCL_HE17
Encyclopedic resources Wikidata; Q54950541
Entry history
Entry creation01-Dec-2016
Last entry update19-Dec-2024
Version number13