| Cell line name |
HCT 116 DNMT3B(-/-) |
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| Synonyms |
DNMT3B (-/-) HCT116; HCT116 DNMT3b-/-; 3bKO; HCT-116 DNMT3b-/- |
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| Accession |
CVCL_HD77 |
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| Resource Identification Initiative |
To cite this cell line use: HCT 116 DNMT3B(-/-) (RRID:CVCL_HD77) |
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| Comments |
Population: Caucasian.
Knockout cell: Method=Homologous recombination; HGNC; HGNC:2979; DNMT3B.
Derived from site: In situ; Colon; UBERON=UBERON_0001155. |
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| Sequence variations |
- Mutation; HGNC; HGNC:173; ACVR2A; Simple; p.Lys437Argfs*5 (c.1310delA); dbSNP=rs764719749; Zygosity=Homozygous (from parent cell line).
- Mutation; HGNC; HGNC:1101; BRCA2; Simple; p.Ile2675Aspfs*6 (c.8021dupA) (c.8021_8022insA); ClinVar=VCV000267050; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:1787; CDKN2A; Simple; p.Arg24Serfs*20 (c.68dupG) (c.68_69insG) (p.G23fs); Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:2514; CTNNB1; Simple; p.Ser45del (c.133_135delTCT); ClinVar=VCV000017576; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:3373; EP300; Simple; p.Met1470Cysfs*22 (c.4408delA); Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:3373; EP300; Simple; p.Asn1700Thrfs*9 (c.5099delA); Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:6407; KRAS; Simple; p.Gly13Asp (c.38G>A); ClinVar=VCV000012580; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:8975; PIK3CA; Simple; p.His1047Arg (c.3140A>G); ClinVar=VCV000013652; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:9277; PPM1D; Simple; p.Leu450Ter (c.1349delT) (p.Leu450fs) (c.1344delT); Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; HGNC:11773; TGFBR2; Simple; p.Lys128Serfs*35 (c.383delA); ClinVar=VCV000477546; Zygosity=Homozygous (from parent cell line).
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| Disease |
Colon carcinoma (NCIt: C4910) |
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| Species of origin |
Homo sapiens (Human)
(NCBI Taxonomy: 9606) |
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| Hierarchy |
Parent: CVCL_0291 (HCT 116) |
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| Sex of cell |
Male |
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| Age at sampling |
48Y |
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| Category |
Cancer cell line |
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| Publications | PubMed=11932749; DOI=10.1038/416552a
Rhee I.P., Bachman K.E., Park B.H., Jair K.-W., Yen R.-W.C., Schuebel K.E., Cui H.-M., Feinberg A.P., Lengauer C., Kinzler K.W., Baylin S.B., Vogelstein B.
DNMT1 and DNMT3b cooperate to silence genes in human cancer cells.
Nature 416:552-556(2002) PubMed=12915469; DOI=10.1093/hmg/ddg226
Paz M.F., Wei S., Cigudosa J.C., Rodriguez-Perales S., Peinado M.A., Huang T.H.-M., Esteller M.
Genetic unmasking of epigenetically silenced tumor suppressor genes in colon cancer cells deficient in DNA methyltransferases.
Hum. Mol. Genet. 12:2209-2219(2003) |
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| Cross-references |
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| Cell line collections (Providers) |
Horizon_Discovery; HD+R02-023
|
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| Cell line databases/resources |
cancercelllines; CVCL_HD77
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| Encyclopedic resources |
Wikidata; Q54881932
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| Entry history |
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| Entry creation | 01-Dec-2016 |
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| Last entry update | 10-Apr-2025 |
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| Version number | 14 |
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