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Cellosaurus SJ-DIPGX9c (CVCL_C1NI)

[Text version]
Cell line name SJ-DIPGX9c
Synonyms SJHGG010327_C3
Accession CVCL_C1NI
Resource Identification Initiative To cite this cell line use: SJ-DIPGX9c (RRID:CVCL_C1NI)
Comments Characteristics: Derived from a patient-derived xenograft.
Doubling time: 9.1 days (PubMed=34215733).
Omics: Deep exome analysis.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Brainstem, pons; UBERON=UBERON_0000988.
Sequence variations
  • Mutation; HGNC; 171; ACVR1; Simple; p.Gly328Glu (c.983G>A); ClinVar=VCV000029595; Zygosity=Heterozygous (PubMed=34215733).
  • Mutation; HGNC; 4776; H3C2; Simple; p.Lys28Met (c.83A>T) (H3.1K27M); Zygosity=Heterozygous (PubMed=34215733).
  • Mutation; HGNC; 8975; PIK3CA; Simple; p.Glu545Lys (c.1633G>A); ClinVar=VCV000013655; Zygosity=Heterozygous (PubMed=34215733).
Disease Diffuse intrinsic pontine glioma (NCIt: C94764)
Diffuse intrinsic pontine glioma (ORDO: Orphanet_497188)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Cancer cell line
STR profile Source(s): PubMed=34215733

Markers:
AmelogeninX
CSF1PO10,13
D3S135816,17
D5S81810,11
D7S82010,12
D8S117913,14
D13S31710,13
D16S53912,14
D18S5118,19
D21S1127,30
FGA20,24
Penta D12
Penta E14,17
TH016
TPOX8,10
vWA14,17

Run an STR similarity search on this cell line
Web pages https://pbtp.stjude.cloud/sample-details/29962/baker/SJHGG010327/SJ-DIPGX9/Cell%20Line
Publications

PubMed=34215733; DOI=10.1038/s41467-021-24168-8; PMCID=PMC8253809
He C., Xu K., Zhu X.-Y., Dunphy P.S., Gudenas B., Lin W.-W., Twarog N., Hover L.D., Kwon C.-H., Kasper L.H., Zhang J.-Y., Li X.-Y., Dalton J., Jonchere B., Mercer K.S., Currier D.G., Caufield W., Wang Y.-Z., Xie J., Broniscer A., Wetmore C., Upadhyaya S.A., Qaddoumi I., Klimo P., Boop F., Gajjar A., Zhang J.-H., Orr B.A., Robinson G.W., Monje M., Freeman B.B. 3rd, Roussel M.F., Northcott P.A., Chen T.-S., Rankovic Z., Wu G., Chiang J.C.-H., Tinkle C.L., Shelat A.A., Baker S.J.
Patient-derived models recapitulate heterogeneity of molecular signatures and drug response in pediatric high-grade glioma.
Nat. Commun. 12:4089.1-4089.17(2021)

Cross-references
Cell line databases/resources cancercelllines; CVCL_C1NI
Encyclopedic resources Wikidata; Q114313023
Entry history
Entry creation22-Sep-2022
Last entry update05-Oct-2023
Version number5