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Cellosaurus RA957 (CVCL_B4UJ)

[Text version]
Cell line name RA957
Accession CVCL_B4UJ
Resource Identification Initiative To cite this cell line use: RA957 (RRID:CVCL_B4UJ)
Comments From: Ludwig Institute for Cancer Research, Lausanne Branch; Lausanne; Switzerland.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: HLA class I peptidome analysis by proteomics.
Omics: HLA class II peptidome analysis by proteomics.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
HLA typing Source: PubMed=28832583
Class I
HLA-AA*02:20,68:01
HLA-BB*35:03,39:01
HLA-CC*04:01,07:02

Source: PubMed=31611696
Class II
HLA-DPDPA1*01:03
DPB1*04:01(105:01),04:02(126:01)
HLA-DQDQA1*03:03,04:01
DQB1*03:01,04:02
HLA-DRDRB1*04:01,08:01
DRB4*01:03
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Transformed cell line
Publications

PubMed=28832583; DOI=10.1371/journal.pcbi.1005725; PMCID=PMC5584980
Bassani-Sternberg M., Chong C., Guillaume P., Solleder M., Pak H., Gannon P.O., Kandalaft L.E., Coukos G., Gfeller D.
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
PLoS Comput. Biol. 13:e1005725.1-e1005725.28(2017)

PubMed=29242379; DOI=10.1074/mcp.TIR117.000383; PMCID=PMC5836376
Chong C., Marino F., Pak H., Racle J., Daniel R.T., Muller M., Gfeller D., Coukos G., Bassani-Sternberg M.
High-throughput and sensitive immunopeptidomics platform reveals profound interferon gamma-mediated remodeling of the human leukocyte antigen (HLA) ligandome.
Mol. Cell. Proteomics 17:533-548(2018)

PubMed=31611696; DOI=10.1038/s41587-019-0289-6
Racle J., Michaux J., Rockinger G.A., Arnaud M., Bobisse S., Chong C., Guillaume P., Coukos G., Harari A., Jandus C., Bassani-Sternberg M., Gfeller D.
Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes.
Nat. Biotechnol. 37:1283-1286(2019)

Cross-references
Encyclopedic resources Wikidata; Q110433142
Proteomic databases PRIDE; PXD006939
PRIDE; PXD012308
Entry history
Entry creation16-Dec-2021
Last entry update29-Jun-2023
Version number5