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Cellosaurus GD149 (CVCL_B4UH)

[Text version]
Cell line name GD149
Accession CVCL_B4UH
Resource Identification Initiative To cite this cell line use: GD149 (RRID:CVCL_B4UH)
Comments From: Ludwig Institute for Cancer Research, Lausanne Branch; Lausanne; Switzerland.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: HLA class I peptidome analysis by proteomics.
Omics: HLA class II peptidome analysis by proteomics.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
HLA typing Source: PubMed=28832583
Class I
HLA-AA*01:01,24:02
HLA-BB*38:01,44:03
HLA-CC*06:02,12:03

Source: PubMed=31611696
Class II
HLA-DPDPA1*01:03,02:01
DPB1*03:01(124:01),04:01(350:01)
HLA-DQDQA1*01:10,02:01
DQB1*02:02,06:03
HLA-DRDRB1*07:01,13:01
DRB3*01:01
DRB4*01:01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Transformed cell line
Publications

PubMed=28832583; DOI=10.1371/journal.pcbi.1005725; PMCID=PMC5584980
Bassani-Sternberg M., Chong C., Guillaume P., Solleder M., Pak H., Gannon P.O., Kandalaft L.E., Coukos G., Gfeller D.
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
PLoS Comput. Biol. 13:e1005725.1-e1005725.28(2017)

PubMed=31611696; DOI=10.1038/s41587-019-0289-6
Racle J., Michaux J., Rockinger G.A., Arnaud M., Bobisse S., Chong C., Guillaume P., Coukos G., Harari A., Jandus C., Bassani-Sternberg M., Gfeller D.
Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes.
Nat. Biotechnol. 37:1283-1286(2019)

Cross-references
Encyclopedic resources Wikidata; Q110432810
Proteomic databases PRIDE; PXD012308
Entry history
Entry creation16-Dec-2021
Last entry update29-Jun-2023
Version number5