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Cellosaurus GM12236 (CVCL_9611)

[Text version]
Cell line name GM12236
Synonyms CEPH-1408-NA12236; 1408-1019
Accession CVCL_9611
Secondary accession CVCL_G517
Resource Identification Initiative To cite this cell line use: GM12236 (RRID:CVCL_9611)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 140811.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Transcriptome analysis by microarray.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
HLA typing Source: IPD-IMGT/HLA=25943
Class I
HLA-AA*02:01,02:01
HLA-BB*07:02,44:02
HLA-CC*05:01,07:02
Class II
HLA-DPDPA1*01:03,02:01:01
DPB1*04:02,14:01
HLA-DQDQA1*03:01,05:01
DQB1*03:01,03:02
HLA-DRDRB1*04:03,12:01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

PubMed=17122850; DOI=10.1038/nature05329
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19797678; DOI=10.1101/gr.097600.109
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20398888; DOI=10.1016/j.ajhg.2010.03.017
Dombroski B.A., Nayak R.R., Ewens K.G., Ankener W., Cheung V.G., Spielman R.S.
Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.
Am. J. Hum. Genet. 86:719-729(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005
Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U., Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R., Scott S.A., Smith C.-Y.H., Toji L.H., Turner A., Kalman L.V.
Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a GeT-RM collaborative project.
J. Mol. Diagn. 18:109-123(2016)

PubMed=29474986; DOI=10.1016/j.jmoldx.2018.01.011
Pratt V.M., Del Tredici A.L., Hachad H., Ji Y., Kalman L.V., Scott S.A., Weck K.E.
Recommendations for clinical CYP2C19 genotyping allele selection: a report of the Association for Molecular Pathology.
J. Mol. Diagn. 20:269-276(2018)

Cross-references
Cell line collections (Providers) Coriell; GM12236 - Discontinued
Cell line databases/resources CLO; CLO_0019202
dbMHC; 48683
IHW; IHW01148
IPD-IMGT/HLA; 25943
Encyclopedic resources Wikidata; Q54845620
Experimental variables resources EFO; EFO_0001143
Gene expression databases GEO; GSM25568
GEO; GSM25569
GEO; GSM112537
GEO; GSM112842
GEO; GSM273331
GEO; GSM273332
GEO; GSM314930
GEO; GSM314931
GEO; GSM420819
GEO; GSM420820
GEO; GSM486809
GEO; GSM486810
GEO; GSM648891
GEO; GSM659966
GEO; GSM660153
GEO; GSM660360
GEO; GSM905873
GEO; GSM905968
GEO; GSM906063
Entry history
Entry creation06-Jun-2012
Last entry update05-Oct-2023
Version number25