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Cellosaurus GM07022 (CVCL_9591)

[Text version]
Cell line name GM07022
Accession CVCL_9591
Resource Identification Initiative To cite this cell line use: GM07022 (RRID:CVCL_9591)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: CEPH/Utah pedigree cell line collection.
Registration: CEPH Families Reference Panel; 134011.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Virology: Contains a chromosomally integrated human herpesvirus 6B (CI-HHV-6B).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 63Y
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

CLPUB00447
Mulivor R.A., Suchy S.F.
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda (1992)

PubMed=15514893; DOI=10.1086/426461
Monks S.A., Leonardson A., Zhu H., Cundiff P., Pietrusiak P., Edwards S., Phillips J.W., Sachs A., Schadt E.E.
Genetic inheritance of gene expression in human cell lines.
Am. J. Hum. Genet. 75:1094-1105(2004)

PubMed=17122850; DOI=10.1038/nature05329
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D., Hafler D.A., Daly M.J., Altshuler D.M.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20398888; DOI=10.1016/j.ajhg.2010.03.017
Dombroski B.A., Nayak R.R., Ewens K.G., Ankener W., Cheung V.G., Spielman R.S.
Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.
Am. J. Hum. Genet. 86:719-729(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=24057213; DOI=10.1093/nar/gkt840
Huang Y., Hidalgo-Bravo A., Zhang E.-J., Cotton V.E., Mendez-Bermudez A., Wig G.-J., Medina-Calzada Z., Neumann R., Jeffreys A.J., Winney B., Wilson J.F., Clark D.A., Dyer M.J.S., Royle N.J.
Human telomeres that carry an integrated copy of human herpesvirus 6 are often short and unstable, facilitating release of the viral genome from the chromosome.
Nucleic Acids Res. 42:315-327(2014)

Cross-references
Cell line collections (Providers) Coriell; GM07022
Cell line databases/resources CLO; CLO_0036831
Biological sample resources IGSR; NA07022
Encyclopedic resources Wikidata; Q54842470
Experimental variables resources EFO; EFO_0001111
Gene expression databases GEO; GSM25377
GEO; GSM25378
GEO; GSM30020
GEO; GSM112398
GEO; GSM112765
GEO; GSM188830
GEO; GSM273279
GEO; GSM273280
GEO; GSM291592
GEO; GSM314833
GEO; GSM314834
GEO; GSM420508
GEO; GSM420509
GEO; GSM424324
GEO; GSM486743
GEO; GSM486744
GEO; GSM648943
GEO; GSM659964
GEO; GSM660167
GEO; GSM660373
GEO; GSM905822
GEO; GSM905917
GEO; GSM906012
GEO; GSM957360
Entry history
Entry creation06-Jun-2012
Last entry update29-Jun-2023
Version number23