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Cellosaurus GM06993 (CVCL_9588)

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Cell line name GM06993
Synonyms CEPH-1341-NA06993; 1341-8320
Accession CVCL_9588
Secondary accession CVCL_G429
Resource Identification Initiative To cite this cell line use: GM06993 (RRID:CVCL_9588)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: CEPH/Utah pedigree cell line collection.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 134113.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
HLA typing Source: IPD-IMGT/HLA=25857
Class I
HLA-AA*01:01,02:01
HLA-BB*07:02,50:01
HLA-CC*07:02,06:02
Class II
HLA-DPDPA1*01:04
DPB1*06:01,15:01
HLA-DQDQA1*02:01,03:01
DQB1*02:01,03:02:01
HLA-DRDRB1*04:04,07:01
DRB4*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 74Y
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

CLPUB00447
Mulivor R.A., Suchy S.F.
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In misc. document) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda; USA (1992)

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D., Hafler D.A., Daly M.J., Altshuler D.M.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20398888; DOI=10.1016/j.ajhg.2010.03.017; PMCID=PMC2869002
Dombroski B.A., Nayak R.R., Ewens K.G., Ankener W., Cheung V.G., Spielman R.S.
Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.
Am. J. Hum. Genet. 86:719-729(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005; PMCID=PMC4695224
Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U., Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R., Scott S.A., Smith C.-Y.H., Toji L.H., Turner A., Kalman L.V.
Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a GeT-RM collaborative project.
J. Mol. Diagn. 18:109-123(2016)

Cross-references
Cell line collections (Providers) Coriell; GM06993
Cell line databases/resources CLO; CLO_0036574
dbMHC; 48584
IHW; IHW01059
IPD-IMGT/HLA; 25857
Biological sample resources IGSR; NA06993
Encyclopedic resources Wikidata; Q54842435
Experimental variables resources EFO; EFO_0001108
Gene expression databases GEO; GSM25356
GEO; GSM25357
GEO; GSM112394
GEO; GSM112761
GEO; GSM188786
GEO; GSM273273
GEO; GSM273274
GEO; GSM291588
GEO; GSM314822
GEO; GSM314823
GEO; GSM420472
GEO; GSM420473
GEO; GSM424321
GEO; GSM486737
GEO; GSM486738
GEO; GSM648840
GEO; GSM659999
GEO; GSM660205
GEO; GSM660409
GEO; GSM905818
GEO; GSM905913
GEO; GSM906008
GEO; GSM957357
Entry history
Entry creation06-Jun-2012
Last entry update05-Oct-2023
Version number25