Cell line name |
PMF-ko14 |
Synonyms |
PMF-Ko14; PMFko14; PMFKO14 |
Accession |
CVCL_8747 |
Secondary accession |
CVCL_H196 |
Resource Identification Initiative |
To cite this cell line use: PMF-ko14 (RRID:CVCL_8747) |
Comments |
Problematic cell line: Contaminated. Shown to be a KM12 derivative (PubMed=25714623). Originally thought to originate from a Japanese 51 year old female patient suffering from a peritoneal disseminated moderately differentiated adenocarcinoma of the cecum. Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Registration: International Cell Line Authentication Committee, Register of Misidentified Cell Lines; ICLAC-00629. Population: Caucasian. Doubling time: 40 hours (Note=At 30th passage), 24 hours (Note=At 50th passage) (PubMed=10853016). Omics: SNP array analysis. Misspelling: RMFko14; Cosmic=1187313. Derived from site: In situ; Colon; UBERON=UBERON_0001155. |
Sequence variations |
- Gene fusion; HGNC; 8031; NTRK1 + HGNC; 12012; TPM3; Name(s)=TPM3-NTRK1 (from parent cell line).
- Mutation; HGNC; 173; ACVR2A; Simple; p.Lys437Argfs*5 (c.1310delA); dbSNP=rs764719749; Zygosity=Homozygous (from parent cell line).
- Mutation; HGNC; 583; APC; Simple; p.Asn1819fs*7 (c.5454_5455insA); Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 1101; BRCA2; Simple; p.Asn1784Hisfs*7 (c.5350_5351delAA); ClinVar=VCV000037959; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 9588; PTEN; Simple; p.Gly129Ter (c.385G>T); Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 9588; PTEN; Simple; p.Lys267Argfs*9 (c.800delA) (p.Leu265fs, c.795delA); ClinVar=VCV000092828; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 11773; TGFBR2; Simple; p.Lys128Serfs*35 (c.383delA); ClinVar=VCV000477546; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 11998; TP53; Simple; p.Val73Trpfs*50 (c.216delC) (p.P72fs); ClinVar=VCV000428897; Zygosity=Heterozygous (from parent cell line).
- Mutation; HGNC; 11998; TP53; Simple; p.His179Arg (c.536A>G); ClinVar=VCV000376606; Zygosity=Heterozygous (from parent cell line).
|
Disease |
Colon carcinoma (NCIt: C4910) |
Species of origin |
Homo sapiens (Human)
(NCBI Taxonomy: 9606) |
Hierarchy |
Parent: CVCL_1331 (KM12) |
Sex of cell |
Male |
Age at sampling |
Age unspecified |
Category |
Cancer cell line |
STR profile |
Source(s): DepMap=ACH-002022; PubMed=25877200; RCB=RCB1426
Markers:Amelogenin | X |
CSF1PO | 10,12 |
D2S1338 | 22,23 |
D3S1358 | 14,15 |
D5S818 | 11 (RCB=RCB1426) 11,15,16,17,18 (DepMap=ACH-002022) 11,16 (PubMed=25877200) |
D7S820 | 8 (RCB=RCB1426) 8,8.3 (DepMap=ACH-002022; PubMed=25877200) |
D8S1179 | 11,12,13 (DepMap=ACH-002022) 13 (PubMed=25877200) |
D13S317 | 12,13,14,15,16 (DepMap=ACH-002022) 13,14,15 (PubMed=25877200; RCB=RCB1426) |
D16S539 | 11,12 (PubMed=25877200; RCB=RCB1426) 11,12,13 (DepMap=ACH-002022) |
D18S51 | 14 |
D19S433 | 11,14 |
D21S11 | 27,33.2,34.2 |
FGA | 20,22 |
Penta D | 12 |
Penta E | 14,17,18,19 (DepMap=ACH-002022) 14,18,19 (PubMed=25877200) |
TH01 | 9.3 (DepMap=ACH-002022; RCB=RCB1426) 9.3,11 (PubMed=25877200) |
TPOX | 11,12 |
vWA | 17 (PubMed=25877200) 17,18 (RCB=RCB1426) 17,18,19 (DepMap=ACH-002022) |
Run an STR similarity search on this cell line |
Web pages |
https://iclac.org/wp-content/uploads/Cross-Contaminations_v13_distribution.xlsx |
Publications | PubMed=10853016; DOI=10.3892/ijo.17.1.39 Okazaki K., Nakayama Y., Shibao K., Hirata K., Sako T., Nagata N., Kuroda Y., Itoh H. Establishment of a human colon cancer cell line (PMF-ko14) displaying highly metastatic activity. Int. J. Oncol. 17:39-45(2000) PubMed=25714623; DOI=10.1371/journal.pone.0116218; PMCID=PMC4340925 Liang-Chu M.M.Y., Yu M.-M., Haverty P.M., Koeman J., Ziegle J., Lee M., Bourgon R., Neve R.M. Human biosample authentication using the high-throughput, cost-effective SNPtrace(TM) system. PLoS ONE 10:E0116218-E0116218(2015) PubMed=25877200; DOI=10.1038/nature14397 Yu M., Selvaraj S.K., Liang-Chu M.M.Y., Aghajani S., Busse M., Yuan J., Lee G., Peale F.V., Klijn C., Bourgon R., Kaminker J.S., Neve R.M. A resource for cell line authentication, annotation and quality control. Nature 520:307-311(2015) |
Cross-references |
Cell line collections (Providers) |
RCB; RCB1426
|
Cell line databases/resources |
CLO; CLO_0050629
cancercelllines; CVCL_8747
DepMap; ACH-002022 - Discontinued
|
Anatomy/cell type resources |
BTO; BTO:0006511
|
Biological sample resources |
BioSample; SAMN03472136
BioSample; SAMN03472887
|
Encyclopedic resources |
Wikidata; Q54947639
|
Polymorphism and mutation databases |
Cosmic; 1187313
|
Entry history |
Entry creation | 04-Apr-2012 |
Last entry update | 02-May-2024 |
Version number | 22 |
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