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Cellosaurus TTC-642 (CVCL_8006)

[Text version]
Cell line name TTC-642
Synonyms TTC 642; TTC642
Accession CVCL_8006
Resource Identification Initiative To cite this cell line use: TTC-642 (RRID:CVCL_8006)
Comments Problematic cell line: Possibly misidentified. Presence of a Y chromosome in cell line that was thought to be of female origin (STR profile).
Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
From: Triche, Timothy J.; Children's Hospital of Los Angeles; Los Angeles; USA.
Karyotypic information: 45,XX,-22 (PubMed=9559292).
Omics: Genomics; Whole exome sequencing.
Omics: Transcriptomics; RNAseq.
Omics: Variations; SNP array analysis.
Derived from site: Metastatic; Neck; UBERON=UBERON_0000974.
Sequence variations
Disease Extrarenal rhabdoid tumor (NCIt: C6586)
Rhabdoid tumor (ORDO: Orphanet_69077)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 5M
Category Cancer cell line
STR profile Source(s): DepMap=ACH-001212

Markers:
AmelogeninX,Y
CSF1PO10,12
D3S135817
D5S81811,12
D7S82011,12
D8S117912,15
D13S31710,12
D16S5399,11
D18S5117,20
D21S1131.2
FGA21,23
Penta D12,13
Penta E9,17
TH019,9.3
TPOX6,9
vWA15,18

Run an STR similarity search on this cell line
Publications

PubMed=9559292; DOI=10.1097/00019606-199712000-00004
Atsushi Suzuki, Shigeru Ohta, Morimi Shimada;
Gene expression of malignant rhabdoid tumor cell lines by reverse transcriptase-polymerase chain reaction.
Diagn. Mol. Pathol. 6:326-332(1997)

PubMed=9920784; DOI=10.1006/bbrc.1998.9968
Toshiki Mori, Yoji Fukuda, Hiroshi Kuroda, Takafumi Matsumura, Shigeru Ota, Tohru Sugimoto, Yusuke Nakamura, Johji Inazawa;
Cloning and characterization of a novel Rab-family gene, Rab36, within the region at 22q11.2 that is homozygously deleted in malignant rhabdoid tumors.
Biochem. Biophys. Res. Commun. 254:594-600(1999)

PubMed=10602515; DOI=10.1038/sj.onc.1203168
Marc F. DeCristofaro, Bryan L. Betz, Wei-Dong Wang, Bernard E. Weissman;
Alteration of hSNF5/INI1/BAF47 detected in rhabdoid cell lines and primary rhabdomyosarcomas but not Wilms' tumors.
Oncogene 18:7559-7565(1999)

PubMed=11921280; DOI=10.1002/gcc.10052
Kaoru Uno, Junko Takita, Kinji Yokomori, Yukichi Tanaka, Shigeru Ohta, Hiroyuki Shimada, Floyd Harry Gilles, Kanji Sugita, Satoshi Abe, Masahiro Sako, Kohei Hashizume, Yasuhide Hayashi;
Aberrations of the hSNF5/INI1 gene are restricted to malignant rhabdoid tumors or atypical teratoid/rhabdoid tumors in pediatric solid tumors.
Genes Chromosomes Cancer 34:33-41(2002)

PubMed=12210830; DOI=10.1002/jnr.10330
Shinobu Yoshida, Tsutomu Narita, Takashi Taga, Shigeru Ohta, Yoshihiro Takeuchi;
Malignant rhabdoid tumor shows incomplete neural characteristics as revealed by expression of SNARE complex.
J. Neurosci. Res. 69:642-652(2002)

PubMed=14662021; DOI=10.1111/j.1349-7006.2003.tb01401.x; PMCID=PMC11160295
Hirofumi Kato, Shigeru Ohta, Shigeki Koshida, Tsutomu Narita, Takashi Taga, Yoshihiro Takeuchi, Kanji Sugita;
Expression of pericyte, mesangium and muscle markers in malignant rhabdoid tumor cell lines: differentiation-induction using 5-azacytidine.
Cancer Sci. 94:1059-1065(2003)

PubMed=24418192; DOI=10.1111/cas.12352; PMCID=PMC4317948
Junko Takita, Yu-Yan Chen, Motohiro Kato, Kentaro Ohki, Yusuke Sato, Shigeru Ohta, Kanji Sugita, Riki Nishimura, Noriko Hoshino, Masafumi Seki, Masashi Sanada ...Show all 14 authors... , Akira Oka, Yasuhide Hayashi, Seishi Ogawa; Show fewer authors
Genome-wide approach to identify second gene targets for malignant rhabdoid tumors using high-density oligonucleotide microarrays.
Cancer Sci. 105:258-264(2014)

PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103
Mahmoud Ghandi, Franklin W. Huang, Judit Jane-Valbuena, Gregory V. Kryukov, Christopher C. Lo, E. Robert McDonald 3rd, Jordi Ginesta Barretina, Ellen T. Gelfand, Craig M. Bielski, Hao-Xin Li, Kevin Hu ...Show all 68 authors... , Alexander Y. Andreev-Drakhlin, Jaegil Kim, Julian M. Hess, Brian J. Haas, Francois Aguet, Barbara A. Weir, Michael V. Rothberg, Brenton R. Paolella, Michael Scott Lawrence, Rehan Akbani, Yi-Ling Lu, Hong L. Tiv, Prafulla C. Gokhale, Antoine de Weck, Ali Amin Mansour, Coyin Oh, Juliann Shih, Kevin Hadi, Yanay Rosen, Jonathan Bistline, Kavitha Venkatesan, Anupama Reddy, Dmitriy Sonkin, Manway Liu, Joseph Lehar, Joshua M. Korn, Dale A. Porter, Michael D. Jones, Javad Golji, Giordano Caponigro, Jordan E. Taylor, Caitlin M. Dunning, Amanda L. Creech, Allison C. Warren, James M. McFarland, Mahdi Zamanighomi, Audrey Kauffmann, Nicolas Stransky, Marcin Imielinski, Yosef E. Maruvka, Andrew D. Cherniack, Aviad Tsherniak, Francisca Vazquez, Jacob D. Jaffe, Andrew Alan Lane, David M. Weinstock, Cory M. Johannessen, Michael P. Morrissey, Frank Stegmeier, Robert Schlegel, William Chun Hahn, Gad Getz, Gordon B. Mills, Jesse S. Boehm, Todd Robert Golub, Levi Alexander Garraway, William Raj Sellers; Show fewer authors
Next-generation characterization of the Cancer Cell Line Encyclopedia.
Nature 569:503-508(2019)

Cross-references
Cell line databases/resources cancercelllines; CVCL_8006
Cell_Model_Passport; SIDM01456
DepMap; ACH-001212
Biological sample resources BioSample; SAMN10989628
Encyclopedic resources Wikidata; Q54973252
Gene expression databases GEO; GSM3145598
GEO; GSM3145741
Polymorphism and mutation databases Cosmic; 801774
Cosmic; 802053
Cosmic; 2144785
Entry history
Entry creation04-Apr-2012
Last entry update14-Aug-2025
Version number26