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Cellosaurus GM11882 (CVCL_7512)

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Cell line name GM11882
Synonyms CEPH-1347-NA11882; 1347-8369
Accession CVCL_7512
Secondary accession CVCL_G465
Resource Identification Initiative To cite this cell line use: GM11882 (RRID:CVCL_7512)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 134715.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
HLA typing Source: IPD-IMGT/HLA=25893
Class I
HLA-AA*01:01,29:02
HLA-BB*15:01,44:03
HLA-CC*06:02:01:01,16:01
Class II
HLA-DPDPA1*01:03,01:03
DPB1*03:01,04:02
HLA-DQDQA1*01:02,03:01
DQB1*03:02,06:02
HLA-DRDRB1*04:01,15:01
DRB4*01
DRB5*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D., Hafler D.A., Daly M.J., Altshuler D.M.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20398888; DOI=10.1016/j.ajhg.2010.03.017; PMCID=PMC2869002
Dombroski B.A., Nayak R.R., Ewens K.G., Ankener W., Cheung V.G., Spielman R.S.
Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.
Am. J. Hum. Genet. 86:719-729(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

Cross-references
Cell line collections (Providers) Coriell; GM11882
Cell line databases/resources CLO; CLO_0020041
dbMHC; 48638
IHW; IHW01095
IPD-IMGT/HLA; 25893
Biological sample resources IGSR; NA11882
Encyclopedic resources Wikidata; Q54845322
Experimental variables resources EFO; EFO_0001123
Gene expression databases GEO; GSM25481
GEO; GSM25482
GEO; GSM112517
GEO; GSM112822
GEO; GSM188795
GEO; GSM273299
GEO; GSM273300
GEO; GSM291630
GEO; GSM314872
GEO; GSM314873
GEO; GSM420680
GEO; GSM420681
GEO; GSM424335
GEO; GSM486769
GEO; GSM486770
GEO; GSM648892
GEO; GSM659976
GEO; GSM660193
GEO; GSM660387
GEO; GSM905855
GEO; GSM905950
GEO; GSM906045
GEO; GSM957371
Entry history
Entry creation04-Apr-2012
Last entry update05-Oct-2023
Version number25