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Cellosaurus GM07055 (CVCL_7463)

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Cell line name GM07055
Synonyms GM07055A; CEPH-1341-NA07055; 1341-8465
Accession CVCL_7463
Secondary accession CVCL_G431
Resource Identification Initiative To cite this cell line use: GM07055 (RRID:CVCL_7463)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: CEPH/Utah pedigree cell line collection.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 134112.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
HLA typing Source: IPD-IMGT/HLA=25859
Class I
HLA-AA*02:01,68:01:02
HLA-BB*07:02,07:02
HLA-CC*07:02,07:02
Class II
HLA-DPDPA1*01:03,01:03
DPB1*03:01:01,04:01
HLA-DQDQA1*01:01,01:02
DQB1*05:03,06:02
HLA-DRDRB1*14:01,15:01
DRB3*02
DRB5*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 70Y
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

CLPUB00447
Mulivor R.A., Suchy S.F.
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In misc. document) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda; USA (1992)

PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D., Hafler D.A., Daly M.J., Altshuler D.M.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20398888; DOI=10.1016/j.ajhg.2010.03.017; PMCID=PMC2869002
Dombroski B.A., Nayak R.R., Ewens K.G., Ankener W., Cheung V.G., Spielman R.S.
Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.
Am. J. Hum. Genet. 86:719-729(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004; PMCID=PMC3059424
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005; PMCID=PMC4695224
Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U., Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R., Scott S.A., Smith C.-Y.H., Toji L.H., Turner A., Kalman L.V.
Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a GeT-RM collaborative project.
J. Mol. Diagn. 18:109-123(2016)

Cross-references
Cell line collections (Providers) Coriell; GM07055
Cell line databases/resources CLO; CLO_0036802
dbMHC; 48592
IHW; IHW01061
IPD-IMGT/HLA; 25859
Biological sample resources IGSR; NA07055
Encyclopedic resources Wikidata; Q54842508
Experimental variables resources EFO; EFO_0001113
Gene expression databases GEO; GSM25399
GEO; GSM25400
GEO; GSM112402
GEO; GSM112769
GEO; GSM188699
GEO; GSM273283
GEO; GSM273284
GEO; GSM291596
GEO; GSM314845
GEO; GSM314846
GEO; GSM420549
GEO; GSM420550
GEO; GSM424326
GEO; GSM486747
GEO; GSM486748
GEO; GSM648912
GEO; GSM659998
GEO; GSM660206
GEO; GSM660410
GEO; GSM905825
GEO; GSM905920
GEO; GSM906015
GEO; GSM957362
Proteomic databases PRIDE; PXD025499
Entry history
Entry creation04-Apr-2012
Last entry update05-Oct-2023
Version number27