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Cellosaurus GM03657 (CVCL_7398)

[Text version]
Cell line name GM03657
Synonyms GM3657; GM17222
Accession CVCL_7398
Resource Identification Initiative To cite this cell line use: GM03657 (RRID:CVCL_7398)
Comments Part of: Genetic Testing Reference Material (GeT-RM) samples.
Part of: Human variation panel.
Population: Caucasian.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: DNA methylation analysis.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
HLA typing Source: PubMed=29959025
Class I
HLA-AA*02:01:01,68:01:02
HLA-BB*40:01:02,44:02:01
HLA-CC*03:04:01,05:01:01
Class II
HLA-DPDPA1*01:03:01,01:03:01
DPB1*03:01:01G,04:01:01G
HLA-DQDQA1*01:02:01,01:04:01
DQB1*05:03:01,06:04:01
HLA-DRDRB1*13:02:01,14:54:01
DRB3*02:02:01,03:01:01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Originate from same individual CVCL_7399 ! GM03658
Sex of cell Male
Age at sampling 68Y
Category Transformed cell line
STR profile Source(s): PubMed=14642717

Markers:
AmelogeninX,Y
CSF1PO11
D2S133818,22
D3S135816,18
D5S81811
D7S82010,11
D8S117915,16
D12S39118,19
D13S31711,13
D16S53913
D18S5112,20
D19S43313,14
D21S1128,29
DXS10124
FGA18,23
Penta D10,13
Penta E5
SE3322.2,27.2
TH017,9.3
TPOX8,11
vWA14,19

Run an STR similarity search on this cell line
Publications

CLPUB00447
Mulivor R.A., Suchy S.F.
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda (1992)

PubMed=8530025; DOI=10.1006/geno.1995.1130
Fregeau C.J., Aubin R.A., Elliott J.C., Gill S.S., Fourney R.M.
Characterization of human lymphoid cell lines GM9947 and GM9948 as intra- and interlaboratory reference standards for DNA typing.
Genomics 28:184-197(1995)

PubMed=14642717; DOI=10.1016/j.forsciint.2003.09.002
Szibor R., Edelmann J., Hering S., Plate I., Wittig H., Roewer L., Wiegand P., Cali F., Romano V., Michael M.
Cell line DNA typing in forensic genetics -- the necessity of reliable standards.
Forensic Sci. Int. 138:37-43(2003)

PubMed=14583597; DOI=10.1152/physiolgenomics.00163.2003
Pastinen T., Sladek R., Gurd S., Sammak A., Ge B., Lepage P., Lavergne K., Villeneuve A., Gaudin T., Brandstrom H., Beck A., Verner A., Kingsley J., Harmsen E., Labuda D., Morgan K., Vohl M.-C., Naumova A.K., Sinnett D., Hudson T.J.
A survey of genetic and epigenetic variation affecting human gene expression.
Physiol. Genomics 16:184-193(2004)

PubMed=16260726; DOI=10.1073/pnas.0508390102
Harris S.L., Gil G., Robins H., Hu W.-W., Hirshfield K.M., Bond E., Bond G., Levine A.J.
Detection of functional single-nucleotide polymorphisms that affect apoptosis.
Proc. Natl. Acad. Sci. U.S.A. 102:16297-16302(2005)

PubMed=20889555; DOI=10.2353/jmoldx.2010.100090
Pratt V.M., Zehnbauer B.A., Wilson J.A., Epstein-Baak R., Babic N., Bettinotti M.P., Buller-Burckle A.M., Butz K.G., Campbell M., Civalier C., El-Badry A., Farkas D.H., Lyon E., Mandal S., McKinney J., Muralidharan K., Noll L., Sander T., Shabbeer J., Smith C.-Y.H., Telatar M., Toji L.H., Vairavan A., Vance C., Weck K.E., Wu A.H.B., Yeo K.-T.J., Zeller M., Kalman L.V.
Characterization of 107 genomic DNA reference materials for CYP2D6, CYP2C19, CYP2C9, VKORC1, and UGT1A1: a GeT-RM and Association for Molecular Pathology collaborative project.
J. Mol. Diagn. 12:835-846(2010)

PubMed=29959025; DOI=10.1016/j.jmoldx.2018.05.009
Bettinotti M.P., Ferriola D., Duke J.L., Mosbruger T.L., Tairis N., Jennings L., Kalman L.V., Monos D.S.
Characterization of 108 genomic DNA reference materials for 11 human leukocyte antigen loci: a GeT-RM collaborative project.
J. Mol. Diagn. 20:703-715(2018)

PubMed=31401124; DOI=10.1016/j.jmoldx.2019.06.007
Gaedigk A., Turner A., Everts R.E., Scott S.A., Aggarwal P., Broeckel U., McMillin G.A., Melis R., Boone E.C., Pratt V.M., Kalman L.V.
Characterization of reference materials for genetic testing of CYP2D6 alleles: a GeT-RM collaborative project.
J. Mol. Diagn. 21:1034-1052(2019)

Cross-references
Cell line collections (Providers) Coriell; GM03657
Coriell; GM17222
Cell line databases/resources CLO; CLO_0014366
CLO; CLO_0015445
Biological sample resources BioSample; SAMN00808489
Encyclopedic resources Wikidata; Q54838182
Gene expression databases GEO; GSM569548
GEO; GSM596286
GEO; GSM596646
GEO; GSM924824
Entry history
Entry creation04-Apr-2012
Last entry update29-Jun-2023
Version number19