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Cellosaurus GM12840 (CVCL_5E78)

[Text version]
Cell line name GM12840
Accession CVCL_5E78
Resource Identification Initiative To cite this cell line use: GM12840 (RRID:CVCL_5E78)
Comments Part of: CEPH/Utah pedigree cell line collection.
Registration: CEPH Families Reference Panel; 145810/145911.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Transcriptome analysis by microarray.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Sequence variations
  • Mutation; HGNC; HGNC:2621; CYP2C19; Simple; p.Pro227Pro (c.681G>A); ClinVar=VCV000016897; Zygosity=Unspecified; Note=Cryptic splice acceptor activation. CYP2C19*2 allele (from autologous cell line GM12874).
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Originate from same individual CVCL_9628 ! GM12874
Sex of cell Male
Age at sampling Age unspecified
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

Cross-references
Cell line collections (Providers) Coriell; GM12840
Cell line databases/resources CLO; CLO_0022389
Encyclopedic resources Wikidata; Q54846125
Gene expression databases GEO; GSM25672
GEO; GSM25673
GEO; GSM315015
GEO; GSM315016
GEO; GSM421054
GEO; GSM421055
GEO; GSM906209
GEO; GSM906210
Entry history
Entry creation14-Dec-2015
Last entry update19-Dec-2024
Version number21