Cellosaurus SUM229PE (CVCL_5594)
Cell line name | SUM229PE | ||||||||||||||||||||||
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Synonyms | SUM-229PE; SUM 229PE; SUM-229; SUM 229; SUM229; 229PE | ||||||||||||||||||||||
Accession | CVCL_5594 | ||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: SUM229PE (RRID:CVCL_5594) | ||||||||||||||||||||||
Comments | Group: Triple negative breast cancer (TNBC) cell line. Problematic cell line: Partially misidentified. For a period of time Asterand (now BioIVT) mistakenly distributed SUM149PT (Cellosaurus=CVCL_3422) under the designation of SUM229PE. This leads to the publication of a STR profile (PubMed=25877200) which was almost identical to that of SUM149PT. Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: JWGray breast cancer cell line panel. Registration: International Cell Line Authentication Committee, Register of Misidentified Cell Lines; ICLAC-00548. Doubling time: 42.27 hours (JWGray panel). Omics: Array-based CGH. Omics: Deep exome analysis. Omics: Glycoproteome analysis by proteomics. Omics: miRNA expression profiling. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: Metastatic; Pleural effusion; UBERON=UBERON_0000175. | ||||||||||||||||||||||
Sequence variations |
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HLA typing | Source: PubMed=25960936
Source: PubMed=26589293
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Disease | Breast carcinoma (NCIt: C4872) | ||||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||||
Sex of cell | Female | ||||||||||||||||||||||
Age at sampling | Age unspecified | ||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||
STR profile | Source(s): BioIVT/Asterand Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||
Web pages | https://bioivt.com/sum-breast-cancer-cell-lines/ https://www.synapse.org/#!Synapse:syn2346643/wiki/62255 https://iclac.org/wp-content/uploads/Cross-Contaminations_v13_distribution.xlsx | ||||||||||||||||||||||
Publications | PubMed=10424408; DOI=10.1023/A:1006135331912 PubMed=10604729; DOI=10.1038/sj.bjc.6695007; PMCID=PMC2362964 PubMed=10969801 PubMed=15677628; DOI=10.1093/carcin/bgi032 PubMed=16397213; DOI=10.1158/0008-5472.CAN-05-2853 PubMed=16541312; DOI=10.1007/s10549-006-9186-z PubMed=19593635; DOI=10.1007/s10549-009-0460-8 PubMed=21778573; DOI=10.3233/BD-2010-0307; PMCID=PMC3532890 PubMed=23401782; DOI=10.1155/2013/872743; PMCID=PMC3562669 PubMed=23601657; DOI=10.1186/bcr3415; PMCID=PMC3672661 PubMed=24176112; DOI=10.1186/gb-2013-14-10-r110; PMCID=PMC3937590 PubMed=25960936; DOI=10.4161/21624011.2014.954893; PMCID=PMC4355981 PubMed=25485619; DOI=10.1038/nbt.3080 PubMed=25877200; DOI=10.1038/nature14397 PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878 PubMed=28287265; DOI=10.1021/acs.jproteome.6b00470; PMCID=PMC5557415 PubMed=32715085; DOI=10.1038/s41523-020-0173-z; PMCID=PMC7374090 | ||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0009921
cancercelllines; CVCL_5594 Cell_Model_Passport; SIDM01461 DepMap; ACH-001394 LINCS_HMS; 51086 LINCS_LDP; LCL-2065 SLKBase; 295 | ||||||||||||||||||||||
Anatomy/cell type resources | BTO; BTO_0005479 | ||||||||||||||||||||||
Biological sample resources | BioSample; SAMN03471035 | ||||||||||||||||||||||
Chemistry resources | PharmacoDB; SUM229PE_1512_2019 | ||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54970849 | ||||||||||||||||||||||
Experimental variables resources | EFO; EFO_0006762 | ||||||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-2706
GEO; GSM421892 GEO; GSM1172996 GEO; GSM1172902 | ||||||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 904393
Cosmic; 997923 Cosmic; 1046949 Cosmic; 1287930 Cosmic; 1289416 Cosmic; 1460243 Cosmic; 1479523 IARC_TP53; 24363 | ||||||||||||||||||||||
Proteomic databases | PRIDE; PXD005295 | ||||||||||||||||||||||
Sequence databases | EGA; EGAS00001000610 | ||||||||||||||||||||||
Entry history | |||||||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||||||
Last entry update | 19-Dec-2024 | ||||||||||||||||||||||
Version number | 38 |