Cellosaurus HCC-56 (CVCL_2917)
Cell line name | HCC-56 | ||||||||||||||||||
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Synonyms | HCC56 | ||||||||||||||||||
Accession | CVCL_2917 | ||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: HCC-56 (RRID:CVCL_2917) | ||||||||||||||||||
Comments | Problematic cell line: Contaminated. Shown to be a HSC-57 derivative (JCRB=JCRB1037). Originally thought to originate from a colon adenocarcinoma. Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: TCGA-110-CL cell line panel. Population: Japanese. Microsatellite instability: Stable (MSS) (Sanger). Omics: Deep exome analysis. Omics: Deep quantitative phosphoproteome analysis. Omics: Deep quantitative proteome analysis. Omics: DNA methylation analysis. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: Metastatic; Ascites; UBERON=UBERON_0007795. | ||||||||||||||||||
Sequence variations |
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HLA typing | Source: PubMed=26589293
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Genome ancestry | Source: PubMed=30894373
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Disease | Gastric tubular adenocarcinoma (NCIt: C5473) | ||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||
Hierarchy | Parent: CVCL_A613 (HSC-57) | ||||||||||||||||||
Sex of cell | Male | ||||||||||||||||||
Age at sampling | 76Y | ||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||
STR profile | Source(s): Cosmic-CLP=1290907; JCRB=JCRB1037 Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||
Publications | PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662 PubMed=22460905; DOI=10.1038/nature11003; PMCID=PMC3320027 PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469 PubMed=28854368; DOI=10.1016/j.celrep.2017.08.010; PMCID=PMC5583477 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675 PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103 PubMed=31395879; DOI=10.1038/s41467-019-11415-2; PMCID=PMC6687785 PubMed=31978347; DOI=10.1016/j.cell.2019.12.023; PMCID=PMC7339254 | ||||||||||||||||||
Cross-references | |||||||||||||||||||
Cell line collections (Providers) | JCRB; JCRB1037 - Discontinued | ||||||||||||||||||
Cell line databases/resources | CLO; CLO_0009963
cancercelllines; CVCL_2917 ColonAtlas; HCC56 Cosmic-CLP; 1290907 DepMap; ACH-000467 LINCS_LDP; LCL-1177 | ||||||||||||||||||
Biological sample resources | BioSample; SAMN03472484
BioSample; SAMN10988141 | ||||||||||||||||||
CRISP screens repositories | BioGRID_ORCS_Cell_line; 659 | ||||||||||||||||||
Chemistry resources | GDSC; 1290907
PharmacoDB; HCC56_460_2019 PubChem_Cell_line; CVCL_2917 | ||||||||||||||||||
Encyclopedic resources | Wikidata; Q54881511 | ||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-2770
GEO; GSM827288 GEO; GSM887057 GEO; GSM888127 GEO; GSM1669861 | ||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 1995434
IARC_TP53; 28343 LiGeA; CCLE_518 Progenetix; CVCL_2917 | ||||||||||||||||||
Proteomic databases | PRIDE; PXD005235 | ||||||||||||||||||
Entry history | |||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||
Last entry update | 02-May-2024 | ||||||||||||||||||
Version number | 33 |