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Cellosaurus HGADFN167 (CVCL_1Y92)

[Text version]
Cell line name HGADFN167
Synonyms HGPS; PRF167
Accession CVCL_1Y92
Resource Identification Initiative To cite this cell line use: HGADFN167 (RRID:CVCL_1Y92)
Comments Part of: ENCODE project common cell types; tier 3.
Part of: Progeria Research Foundation cell lines.
Omics: DNA methylation analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Skin, dermis; UBERON=UBERON_0002067.
Cell type: Fibroblast of skin; CL=CL_0002620.
Sequence variations
  • Mutation; HGNC; HGNC:6636; LMNA; Simple; p.Gly608Gly (c.1824C>T); ClinVar=VCV000014500; Zygosity=Heterozygous; Note=Creates an exonic consensus splice donor sequence that leads to the activation of a cryptic splice site which in turn causes skipping of 150 bp of the LMNA mRNA leading to the deletion of 50 amino acids (PRF).
Disease Progeria (NCIt: C34951)
Hutchinson-Gilford progeria syndrome (ORDO: Orphanet_740)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_2A11 (HGADFN167 iPS1J)CVCL_2A12 (HGADFN167 iPS1Q)
Originate from same individual CVCL_1Z28 ! HGALBV009
Sex of cell Male
Age at sampling 8Y5M
Category Finite cell line
Web pages https://www.progeriaresearch.org/available-cell-lines/
http://genome.ucsc.edu/ENCODE/protocols/cell/human/progeria_Crawford_protocol.pdf
Publications

PubMed=19958786; DOI=10.1016/j.mad.2009.11.006; PMCID=PMC2837844
Viteri G., Chung Y.W., Stadtman E.R.
Effect of progerin on the accumulation of oxidized proteins in fibroblasts from Hutchinson Gilford progeria patients.
Mech. Ageing Dev. 131:2-8(2010)

PubMed=23027899; DOI=10.1083/jcb.201207072; PMCID=PMC3461511
Gordon L.B., Cao K., Collins F.S.
Progeria: translational insights from cell biology.
J. Cell Biol. 199:9-13(2012)

PubMed=23325432; DOI=10.1101/gr.147942.112; PMCID=PMC3589544
Varley K.E., Gertz J., Bowling K.M., Parker S.L., Reddy T.E., Pauli-Behn F., Cross M.K., Williams B.A., Stamatoyannopoulos J.A., Crawford G.E., Absher D.M., Wold B.J., Myers R.M.
Dynamic DNA methylation across diverse human cell lines and tissues.
Genome Res. 23:555-567(2013)

PubMed=28855503; DOI=10.1038/s41467-017-00322-z; PMCID=PMC5577202
Buchwalter A., Hetzer M.W.
Nucleolar expansion and elevated protein translation in premature aging.
Nat. Commun. 8:328.1-328.13(2017)

PubMed=30567591; DOI=10.1186/s13059-018-1599-6; PMCID=PMC6300908
Fleischer J.G., Schulte R., Tsai H.H., Tyagi S., Ibarra A., Shokhirev M.N., Huang L., Hetzer M.W., Navlakha S.
Predicting age from the transcriptome of human dermal fibroblasts.
Genome Biol. 19:221.1-221.8(2018)

Cross-references
Biological sample resources ENCODE; ENCBS381ENC
Encyclopedic resources Wikidata; Q54885949
Experimental variables resources EFO; EFO_0005909
Gene expression databases GEO; GSM1023616
GEO; GSM1023617
GEO; GSM1023618
GEO; GSM1023619
GEO; GSM1023624
GEO; GSM1023625
GEO; GSM1023626
GEO; GSM1023627
GEO; GSM3124694
Entry history
Entry creation22-Sep-2015
Last entry update19-Dec-2024
Version number15