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Cellosaurus 42-MG-BA (CVCL_1798)

[Text version]
Cell line name 42-MG-BA
Synonyms 42MGBA
Accession CVCL_1798
Resource Identification Initiative To cite this cell line use: 42-MG-BA (RRID:CVCL_1798)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Part of: COSMIC cell lines project.
Population: Caucasian.
Doubling time: 48-54 hours (PubMed=9604998); ~40 hours (DSMZ=ACC-431).
Microsatellite instability: Stable (MSS) (Sanger; PubMed=31068700).
Omics: CRISPR phenotypic screen.
Omics: Deep exome analysis.
Omics: Deep quantitative proteome analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Brain, temporal lobe; UBERON=UBERON_0001871.
Sequence variations
  • Mutation; HGNC; 9588; PTEN; Simple; c.164+1_164+2insG; Zygosity=Heterozygous; Note=Causes aberrant splicing (PubMed=28464039; Cosmic-CLP=687561).
  • Mutation; HGNC; 11998; TP53; Simple; p.Thr211Ile (c.632C>T); ClinVar=VCV001503185; Zygosity=Heterozygous (Cosmic-CLP=687561; DepMap=ACH-000323).
  • Mutation; HGNC; 11998; TP53; Simple; p.Arg282Gln (c.845G>A); ClinVar=VCV000237956; Zygosity=Heterozygous (Cosmic-CLP=687561; DepMap=ACH-000323).
HLA typing Source: PubMed=26589293
Class I
HLA-AA*33:03,33:03
HLA-BB*39:01,39:01
HLA-CC*12:03,12:03
Class II
HLA-DRDRB1*11:11,11:11
Genome ancestry Source: PubMed=30894373

Origin% genome
African0.01
Native American0
East Asian, North4.88
East Asian, South0
South Asian0
European, North63.22
European, South31.9
Disease Glioblastoma (NCIt: C3058)
Glioblastoma (ORDO: Orphanet_360)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 63Y
Category Cancer cell line
STR profile Source(s): Cosmic-CLP=687561; DSMZ=ACC-431

Markers:
AmelogeninX
CSF1PO10,12
D2S133820
D3S135815
D5S81811,12
D7S82010
D8S117913
D13S31713
D16S53910
D18S5122
D19S43315
D21S1130
FGA22
Penta D12,14
Penta E7,17
TH016,8
TPOX8,11
vWA18

Run an STR similarity search on this cell line
Publications

PubMed=9604998
Perzelova A., Macikova I., Mraz P., Bizik I., Steno J.
Characterization of two new permanent glioma cell lines 8-MG-BA and 42-MG-BA.
Neoplasma 45:25-29(1998)

PubMed=22460905; DOI=10.1038/nature11003; PMCID=PMC3320027
Barretina J.G., Caponigro G., Stransky N., Venkatesan K., Margolin A.A., Kim S., Wilson C.J., Lehar J., Kryukov G.V., Sonkin D., Reddy A., Liu M., Murray L., Berger M.F., Monahan J.E., Morais P., Meltzer J., Korejwa A., Jane-Valbuena J., Mapa F.A., Thibault J., Bric-Furlong E., Raman P., Shipway A., Engels I.H., Cheng J., Yu G.-Y.K., Yu J.-J., Aspesi P. Jr., de Silva M., Jagtap K., Jones M.D., Wang L., Hatton C., Palescandolo E., Gupta S., Mahan S., Sougnez C., Onofrio R.C., Liefeld T., MacConaill L.E., Winckler W., Reich M., Li N.-X., Mesirov J.P., Gabriel S.B., Getz G., Ardlie K., Chan V., Myer V.E., Weber B.L., Porter J., Warmuth M., Finan P., Harris J.L., Meyerson M.L., Golub T.R., Morrissey M.P., Sellers W.R., Schlegel R., Garraway L.A.
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
Nature 483:603-607(2012)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878
Scholtalbers J., Boegel S., Bukur T., Byl M., Goerges S., Sorn P., Loewer M., Sahin U., Castle J.C.
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X.-M., Egan R.K., Liu Q.-S., Mironenko T., Mitropoulos X., Richardson L., Wang J.-H., Zhang T.-H., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=28464039; DOI=10.1371/journal.pone.0176683; PMCID=PMC5413031
Hill V.K., Kim J.-S., James C.D., Waldman T.
Correction of PTEN mutations in glioblastoma cell lines via AAV-mediated gene editing.
PLoS ONE 12:E0176683-E0176683(2017)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675
Dutil J., Chen Z.-H., Monteiro A.N.A., Teer J.K., Eschrich S.A.
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

PubMed=30971826; DOI=10.1038/s41586-019-1103-9
Behan F.M., Iorio F., Picco G., Goncalves E., Beaver C.M., Migliardi G., Santos R., Rao Y., Sassi F., Pinnelli M., Ansari R., Harper S., Jackson D.A., McRae R., Pooley R., Wilkinson P., van der Meer D.J., Dow D., Buser-Doepner C.A., Bertotti A., Trusolino L., Stronach E.A., Saez-Rodriguez J., Yusa K., Garnett M.J.
Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens.
Nature 568:511-516(2019)

PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103
Ghandi M., Huang F.W., Jane-Valbuena J., Kryukov G.V., Lo C.C., McDonald E.R. 3rd, Barretina J.G., Gelfand E.T., Bielski C.M., Li H.-X., Hu K., Andreev-Drakhlin A.Y., Kim J., Hess J.M., Haas B.J., Aguet F., Weir B.A., Rothberg M.V., Paolella B.R., Lawrence M.S., Akbani R., Lu Y.-L., Tiv H.L., Gokhale P.C., de Weck A., Mansour A.A., Oh C., Shih J., Hadi K., Rosen Y., Bistline J., Venkatesan K., Reddy A., Sonkin D., Liu M., Lehar J., Korn J.M., Porter D.A., Jones M.D., Golji J., Caponigro G., Taylor J.E., Dunning C.M., Creech A.L., Warren A.C., McFarland J.M., Zamanighomi M., Kauffmann A., Stransky N., Imielinski M., Maruvka Y.E., Cherniack A.D., Tsherniak A., Vazquez F., Jaffe J.D., Lane A.A., Weinstock D.M., Johannessen C.M., Morrissey M.P., Stegmeier F., Schlegel R., Hahn W.C., Getz G., Mills G.B., Boehm J.S., Golub T.R., Garraway L.A., Sellers W.R.
Next-generation characterization of the Cancer Cell Line Encyclopedia.
Nature 569:503-508(2019)

PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775
Goncalves E., Poulos R.C., Cai Z.-X., Barthorpe S., Manda S.S., Lucas N., Beck A., Bucio-Noble D., Dausmann M., Hall C., Hecker M., Koh J., Lightfoot H., Mahboob S., Mali I., Morris J., Richardson L., Seneviratne A.J., Shepherd R., Sykes E., Thomas F., Valentini S., Williams S.G., Wu Y.-X., Xavier D., MacKenzie K.L., Hains P.G., Tully B., Robinson P.J., Zhong Q., Garnett M.J., Reddel R.R.
Pan-cancer proteomic map of 949 human cell lines.
Cancer Cell 40:835-849.e8(2022)

Cross-references
Cell line collections (Providers) DSMZ; ACC-431
Cell line databases/resources CLO; CLO_0001367
cancercelllines; CVCL_1798
Cell_Model_Passport; SIDM00982
Cosmic-CLP; 687561
DepMap; ACH-000323
DSMZCellDive; ACC-431
LINCS_LDP; LCL-1347
Biological sample resources BioSample; SAMN03473596
BioSample; SAMN10988275
CRISP screens repositories BioGRID_ORCS_Cell_line; 440
Chemistry resources GDSC; 687561
PharmacoDB; 42MGBA_16_2019
Encyclopedic resources Wikidata; Q54603004
Gene expression databases ArrayExpress; E-MTAB-2770
ArrayExpress; E-MTAB-3610
GEO; GSM326214
GEO; GSM886839
GEO; GSM887902
GEO; GSM1669567
Polymorphism and mutation databases Cosmic; 687561
Cosmic; 1746946
Cosmic; 1995325
Cosmic; 2060804
Cosmic; 2302328
Cosmic; 2732518
IARC_TP53; 28274
LiGeA; CCLE_146
Progenetix; CVCL_1798
Proteomic databases PRIDE; PXD030304
Sequence databases EGA; EGAS00001000978
Entry history
Entry creation04-Apr-2012
Last entry update02-May-2024
Version number37