Cellosaurus RXF 393L (CVCL_1673)
Cell line name | RXF 393L | ||||||||||||||||||||||||||||||||
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Synonyms | RXF393L; RXF-393 L; RXF-393; RXF 393; RXF.393; RXF393; RXF 393NL | ||||||||||||||||||||||||||||||||
Accession | CVCL_1673 | ||||||||||||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: RXF 393L (RRID:CVCL_1673) | ||||||||||||||||||||||||||||||||
Comments | Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: MD Anderson Cell Lines Project. Part of: NCI-60 cancer cell line panel. Population: Caucasian. Doubling time: 62.9 hours (NCI-DTP=RXF 393). Microsatellite instability: Stable (MSS) (Sanger). Omics: Array-based CGH. Omics: CNV analysis. Omics: Deep exome analysis. Omics: Deep proteome analysis. Omics: Deep quantitative proteome analysis. Omics: DNA methylation analysis. Omics: Fluorescence phenotype profiling. Omics: lncRNA expression profiling. Omics: Metabolome analysis. Omics: Protein expression by reverse-phase protein arrays. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Misspelling: RXF393-RU; Cosmic=1175851. | ||||||||||||||||||||||||||||||||
Sequence variations |
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HLA typing | Source: PubMed=15748285
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Genome ancestry | Source: PubMed=30894373
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Disease | Renal cell carcinoma (NCIt: C9385) Renal cell carcinoma (ORDO: Orphanet_217071) | ||||||||||||||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||||||||||||||
Sex of cell | Male | ||||||||||||||||||||||||||||||||
Age at sampling | 54Y | ||||||||||||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||||||||||||
STR profile | Source(s): Cosmic-CLP=905978; PubMed=19372543 Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||||||||||||
Web pages | https://dtp.cancer.gov/discovery_development/nci-60/cell_list.htm https://strap.nci.nih.gov/celline_detail.php?sample_id=39 https://tcpaportal.org/mclp/ | ||||||||||||||||||||||||||||||||
Publications | PubMed=2041050; DOI=10.1093/jnci/83.11.757 PubMed=10700174; DOI=10.1038/73432 PubMed=15748285; DOI=10.1186/1479-5876-3-11; PMCID=PMC555742 PubMed=17088437; DOI=10.1158/1535-7163.MCT-06-0433; PMCID=PMC2705832 PubMed=18277095; DOI=10.4161/cbt.7.5.5712 PubMed=19372543; DOI=10.1158/1535-7163.MCT-08-0921; PMCID=PMC4020356 PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113 PubMed=22068913; DOI=10.1073/pnas.1111840108; PMCID=PMC3219108 PubMed=22347499; DOI=10.1371/journal.pone.0031628; PMCID=PMC3276511 PubMed=22384151; DOI=10.1371/journal.pone.0032096; PMCID=PMC3285665 PubMed=22628656; DOI=10.1126/science.1218595; PMCID=PMC3526189 PubMed=23856246; DOI=10.1158/0008-5472.CAN-12-3342; PMCID=PMC4893961 PubMed=23933261; DOI=10.1016/j.celrep.2013.07.018 PubMed=24279929; DOI=10.1186/2049-3002-1-20; PMCID=PMC4178206 PubMed=24670534; DOI=10.1371/journal.pone.0092047; PMCID=PMC3966786 PubMed=27377824; DOI=10.1038/sdata.2016.52; PMCID=PMC4932877 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469 PubMed=27807467; DOI=10.1186/s13100-016-0078-4; PMCID=PMC5087121 PubMed=28196595; DOI=10.1016/j.ccell.2017.01.005; PMCID=PMC5501076 PubMed=28489074; DOI=10.1038/ncomms15165; PMCID=PMC5436135 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675 PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775 | ||||||||||||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||||||||||||
Cell line collections (Providers) | NCI-DTP; RXF 393 | ||||||||||||||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0009982
cancercelllines; CVCL_1673 Cell_Model_Passport; SIDM00086 Cosmic-CLP; 905978 DepMap; ACH-002195 LINCS_LDP; LCL-1770 SKY/M-FISH/CGH; 2800 | ||||||||||||||||||||||||||||||||
Anatomy/cell type resources | BTO; BTO:0004207 | ||||||||||||||||||||||||||||||||
Chemistry resources | ChEMBL-Cells; CHEMBL3307734
ChEMBL-Targets; CHEMBL614886 GDSC; 905978 PharmacoDB; RXF393_1338_2019 PubChem_Cell_line; CVCL_1673 | ||||||||||||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54951507 | ||||||||||||||||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-783
ArrayExpress; E-MTAB-3610 GEO; GSM2100 GEO; GSM743484 GEO; GSM750839 GEO; GSM799375 GEO; GSM799438 GEO; GSM847111 GEO; GSM844678 GEO; GSM844679 GEO; GSM1153448 GEO; GSM1178577 GEO; GSM1178578 GEO; GSM1178579 GEO; GSM1181369 GEO; GSM1181370 GEO; GSM1670398 GEO; GSM2124681 | ||||||||||||||||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 875872
Cosmic; 905978 Cosmic; 974306 Cosmic; 1175851 Cosmic; 1305376 Cosmic; 1312364 Cosmic; 1998471 IARC_TP53; 18073 Progenetix; CVCL_1673 | ||||||||||||||||||||||||||||||||
Proteomic databases | PRIDE; PXD005940
PRIDE; PXD005942 PRIDE; PXD005946 PRIDE; PXD030304 | ||||||||||||||||||||||||||||||||
Sequence databases | EGA; EGAS00001000978 | ||||||||||||||||||||||||||||||||
Entry history | |||||||||||||||||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||||||||||||||||
Last entry update | 02-May-2024 | ||||||||||||||||||||||||||||||||
Version number | 40 |