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Cellosaurus GM12046 (CVCL_0V42)

[Text version]
Cell line name GM12046
Synonyms CEPH-1346-NA12046; 1346-8366
Accession CVCL_0V42
Secondary accession CVCL_G459
Resource Identification Initiative To cite this cell line use: GM12046 (RRID:CVCL_0V42)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 134614.
Population: Caucasian; Utah residents with ancestry from Northern and Western Europe.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CAGE-seq analysis.
Omics: CNV analysis.
Omics: Genome sequenced.
Omics: Transcriptome analysis by microarray.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
HLA typing Source: IPD-IMGT/HLA=25887
Class I
HLA-AA*01:01,02:05
HLA-BB*50:01,57:01
HLA-CC*06:02,06:02
Class II
HLA-DPDPA1*01:03,02:01:01
DPB1*03:01:01,11:01
HLA-DQDQA1*02:01,05:01
DQB1*02:01,02:01
HLA-DRDRB1*03:01,07:01
DRB3*01
DRB4*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

PubMed=19797678; DOI=10.1101/gr.097600.109; PMCID=PMC2775589
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=29116076; DOI=10.1038/s41467-017-01467-7; PMCID=PMC5677018
Garieri M., Delaneau O., Santoni F.A., Fish R.J., Mull D., Carninci P., Dermitzakis E.T., Antonarakis S.E., Fort A.
The effect of genetic variation on promoter usage and enhancer activity.
Nat. Commun. 8:1358.1-1358.9(2017)

Cross-references
Cell line collections (Providers) Coriell; GM12046
Cell line databases/resources CLO; CLO_0020423
dbMHC; 48623
IHW; IHW01089
IPD-IMGT/HLA; 25887
Biological sample resources BioSample; SAMN00801105
IGSR; NA12046
Encyclopedic resources Wikidata; Q54845481
Gene expression databases ArrayExpress; E-MTAB-5835
GEO; GSM25546
GEO; GSM25547
GEO; GSM314908
GEO; GSM314909
GEO; GSM420756
GEO; GSM420757
GEO; GSM1719780
Entry history
Entry creation08-Jul-2015
Last entry update05-Oct-2023
Version number20