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Cellosaurus CCS292 (CVCL_0J30)

[Text version]
Cell line name CCS292
Accession CVCL_0J30
Resource Identification Initiative To cite this cell line use: CCS292 (RRID:CVCL_0J30)
Comments Omics: Deep exome analysis.
Omics: Transcriptome analysis by RNAseq.
Sequence variations
  • Gene fusion; HGNC; HGNC:783; ATF1 + HGNC; HGNC:3508; EWSR1; Name(s)=EWSR1-ATF1, EWS-ATF; Note=Type 1: EWSR1 exon 8 fused to ATF1 exon 4 (PubMed=16766266).
Disease Clear cell sarcoma of soft tissue (NCIt: C3745)
Soft tissue sarcoma (ORDO: Orphanet_3394)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Sex unspecified
Age at sampling Age unspecified
Category Cancer cell line
STR profile Source(s): PubMed=36959380

Markers:
AmelogeninX
CSF1PO12,13
D3S135815
D5S81810,12
D7S8209
D8S117913,16
D13S31712,13
D16S53911
D18S5114,15
D21S1129,30.2
Penta D12
Penta E11,16
TH017,9.3
TPOX8,12
vWA16,17

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Publications

PubMed=16766266; DOI=10.1016/j.ccr.2006.04.021
Davis I.J., Kim J.J., Ozsolak F., Widlund H.R., Rozenblatt-Rosen O., Granter S.R., Du J.-Y., Fletcher J.A., Denny C.T., Lessnick S.L., Linehan W.M., Kung A.L.-J., Fisher D.E.
Oncogenic MITF dysregulation in clear cell sarcoma: defining the MiT family of human cancers.
Cancer Cell 9:473-484(2006)

PubMed=36959380; DOI=10.1038/s41416-023-02222-0; PMCID=PMC10147623
Rasmussen S.V., Wozniak A., Lathara M., Goldenberg J.M., Samudio B.M., Bickford L.R., Nagamori K., Wright H., Woods A.D., Chauhan S., Lee C.-J., Rudzinski E.R., Swift M.K., Kondo T., Fisher D.E., Imyanitov E.N., Machado I., Llombart-Bosch A., Andrulis I.L., Gokgoz N., Wunder J.S., Moritake H., Nakamura T., Srinivasa G., Thway K., Jones R.L., Huang P.H., Berlow N.E., Schoffski P., Keller C.
Functional genomics of human clear cell sarcoma: genomic, transcriptomic and chemical biology landscape for clear cell sarcoma.
Br. J. Cancer 128:1941-1954(2023)

Cross-references
Encyclopedic resources Wikidata; Q54809057
Sequence databases EGA; EGAD00001008611
Entry history
Entry creation10-Apr-2015
Last entry update19-Dec-2024
Version number6