Cellosaurus SNU-5 (CVCL_0078)
Cell line name | SNU-5 | ||||||||||||||||||||||||||||||||||||
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Synonyms | SNU5; NCI-SNU-5 | ||||||||||||||||||||||||||||||||||||
Accession | CVCL_0078 | ||||||||||||||||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: SNU-5 (RRID:CVCL_0078) | ||||||||||||||||||||||||||||||||||||
Comments | Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: MD Anderson Cell Lines Project. Part of: MET genetic alteration cell panel (ATCC TCP-1036). Part of: Seoul National University (SNU) cell line collection. Population: Korean. Characteristics: MET-amplified, contains 8-9 copies of the gene (PubMed=29435981). Doubling time: 34 hours (PubMed=2158397; PubMed=29435981). Microsatellite instability: Stable (MSS) (Sanger). Omics: Array-based CGH. Omics: Deep exome analysis. Omics: Deep quantitative proteome analysis. Omics: DNA methylation analysis. Omics: Protein expression by reverse-phase protein arrays. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: Metastatic; Ascites; UBERON=UBERON_0007795. | ||||||||||||||||||||||||||||||||||||
Sequence variations |
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HLA typing | Source: PubMed=25960936
Source: PubMed=26589293
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Genome ancestry | Source: PubMed=30894373
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Disease | Gastric adenocarcinoma (NCIt: C4004) | ||||||||||||||||||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||||||||||||||||||
Sex of cell | Female | ||||||||||||||||||||||||||||||||||||
Age at sampling | 33Y | ||||||||||||||||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||||||||||||||||
STR profile | Source(s): ATCC=CRL-5973; Cosmic-CLP=908445; KCLB=00005; PubMed=25877200 Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||||||||||||||||
Web pages | https://tcpaportal.org/mclp/ | ||||||||||||||||||||||||||||||||||||
Publications | PubMed=2158397 PubMed=1676761; DOI=10.1093/jnci/83.13.938 DOI=10.1016/B978-0-12-333530-2.50014-9 PubMed=8806092; DOI=10.1002/jcb.240630505 PubMed=8806095; DOI=10.1002/jcb.240630508 PubMed=19956504; DOI=10.4143/crt.2005.37.1.1; PMCID=PMC2785416 PubMed=20164919; DOI=10.1038/nature08768; PMCID=PMC3145113 PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458; PMCID=PMC2881662 PubMed=22460905; DOI=10.1038/nature11003; PMCID=PMC3320027 PubMed=24807215; DOI=10.1038/ncomms4830; PMCID=PMC4024760 PubMed=25343454; DOI=10.1371/journal.pone.0111146; PMCID=PMC4208810 PubMed=25960936; DOI=10.4161/21624011.2014.954893; PMCID=PMC4355981 PubMed=25485619; DOI=10.1038/nbt.3080 PubMed=25877200; DOI=10.1038/nature14397 PubMed=26589293; DOI=10.1186/s13073-015-0240-5; PMCID=PMC4653878 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017; PMCID=PMC4967469 PubMed=28196595; DOI=10.1016/j.ccell.2017.01.005; PMCID=PMC5501076 PubMed=29435981; DOI=10.1002/ijc.31304 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747; PMCID=PMC6445675 PubMed=31068700; DOI=10.1038/s41586-019-1186-3; PMCID=PMC6697103 PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010; PMCID=PMC9387775 | ||||||||||||||||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||||||||||||||||
Cell line collections (Providers) | ATCC; CRL-5973
BCRC; 60213 KCLB; 00005 | ||||||||||||||||||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0009102
MCCL; MCC:0000436 cancercelllines; CVCL_0078 Cell_Model_Passport; SIDM01144 Cosmic-CLP; 908445 DepMap; ACH-000303 IGRhCellID; SNU5 LINCS_LDP; LCL-1890 | ||||||||||||||||||||||||||||||||||||
Anatomy/cell type resources | BTO; BTO:0004986 | ||||||||||||||||||||||||||||||||||||
Biological sample resources | BioSample; SAMN03470906
BioSample; SAMN10987957 | ||||||||||||||||||||||||||||||||||||
Chemistry resources | ChEMBL-Cells; CHEMBL3307458
ChEMBL-Targets; CHEMBL614934 GDSC; 908445 PharmacoDB; SNU5_1469_2019 PubChem_Cell_line; CVCL_0078 | ||||||||||||||||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54955215 | ||||||||||||||||||||||||||||||||||||
Experimental variables resources | EFO; EFO_0002351 | ||||||||||||||||||||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-38
ArrayExpress; E-MTAB-783 ArrayExpress; E-MTAB-2706 ArrayExpress; E-MTAB-2770 ArrayExpress; E-MTAB-3610 GEO; GSM267422 GEO; GSM267429 GEO; GSM267436 GEO; GSM267443 GEO; GSM552374 GEO; GSM562408 GEO; GSM827398 GEO; GSM828830 GEO; GSM844703 GEO; GSM887634 GEO; GSM888720 GEO; GSM1237681 GEO; GSM1237706 GEO; GSM1374893 GEO; GSM1670275 GEO; GSM1670473 | ||||||||||||||||||||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 685587
Cosmic; 687559 Cosmic; 737363 Cosmic; 848137 Cosmic; 868237 Cosmic; 908445 Cosmic; 921596 Cosmic; 1066231 Cosmic; 1067203 Cosmic; 1090451 Cosmic; 1154648 Cosmic; 1187293 Cosmic; 1294960 Cosmic; 1329187 Cosmic; 1482072 Cosmic; 1528872 Cosmic; 1995597 Cosmic; 2069773 Cosmic; 2373750 Cosmic; 2484972 Cosmic; 2646589 IARC_TP53; 307 IARC_TP53; 21582 LiGeA; CCLE_263 Progenetix; CVCL_0078 | ||||||||||||||||||||||||||||||||||||
Proteomic databases | PRIDE; PXD030304 | ||||||||||||||||||||||||||||||||||||
Sequence databases | EGA; EGAS00001000610
EGA; EGAS00001000978 | ||||||||||||||||||||||||||||||||||||
Entry history | |||||||||||||||||||||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||||||||||||||||||||
Last entry update | 10-Sep-2024 | ||||||||||||||||||||||||||||||||||||
Version number | 44 |